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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g183500v5   uncharacterized protein 
 ath-u.5   AT1G11240   ribosomal RNA-processing protein 
 gma-u.5   100500570   ribosomal RNA-processing protein 17 
 gma-u.5   100305880   uncharacterized LOC100305880 
 sly-u.5   101244038   nucleolar protein 12 domain-containing protein 
 osa-u.5   4332857   ribosomal RNA-processing protein 17 
 zma-u.5   103639127   rRNA-processing protein 17 
 vvi-u.5   100256799   ribosomal RNA-processing protein 17 
 ppo-u.5   7490791   ribosomal RNA-processing protein 17 
 ppo-u.5   7495268   ribosomal RNA-processing protein 17 
 mtr-u.5   11430497   ribosomal RNA-processing protein 17 

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Top 50 coexpressed genes to CHLRE_03g183500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g183500v5 (cre-r.1 coexpression data)

CoexMap"5728470"


creCHLRE_03g183500v5 | Entrez gene ID : 5728470      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001702957.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_001702957.2)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for XP_001702957.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g183500v5

.
ath-u.5
for
AT1G11240

.
gma-u.5
for
100500570

.
gma-u.5
for
100305880

.
sly-u.5
for
101244038

.
osa-u.5
for
4332857

.
zma-u.5
for
103639127

.
vvi-u.5
for
100256799

.
ppo-u.5
for
7490791

.
ppo-u.5
for
7495268

.
mtr-u.5
for
11430497

.


Ortholog ID: 9769
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G11240 LOC100500570 LOC100305880 LOC101244038 LOC4332857 LOC103639127 LOC103871885 LOC100256799 LOC7495268 LOC7490791 LOC11430497 LOC123144387 LOC123091925 LOC123448598 LOC107914003 LOC107924410 LOC106397441 LOC106350021 CHLRE_03g183500v5 LOC8082286 LOC102605580 LOC102626437 LOC100827709 LOC107760445 LOC107810898
Function* ribosomal RNA-processing protein ribosomal RNA-processing protein 17 uncharacterized LOC100305880 nucleolar protein 12 domain-containing protein ribosomal RNA-processing protein 17 rRNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 nucleolar protein 12 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 uncharacterized protein ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 ribosomal RNA-processing protein 17 nucleolar protein 12 uncharacterized LOC107760445 uncharacterized LOC107810898
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 2
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre00190 Oxidative phosphorylation 2
cre04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03050 Proteasome 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837665 100500570 100305880 101244038 4332857 103639127 103871885 100256799 7495268 7490791 11430497 123144387 123091925 123448598 107914003 107924410 106397441 106350021 5728470 8082286 102605580 102626437 100827709 107760445 107810898
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