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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g483720v5   uncharacterized protein 
 ath-u.5   PTAC9   plastid transcriptionally active 9 
 ath-u.5   OSB3   organellar single-stranded DNA binding protein 3 
 ath-u.5   OSB4   organellar single-stranded DNA binding protein 4 
 gma-u.5   100788700   protein OSB3, chloroplastic/mitochondrial-like 
 sly-u.5   101253926   protein OSB2, chloroplastic 
 osa-u.5   4325759   protein OSB2, chloroplastic 
 zma-u.5   100278261   Protein OSB2 chloroplastic 
 bra-r.6   103827828   protein OSB3, chloroplastic/mitochondrial 
 bra-r.6   103840276   protein OSB4, chloroplastic 
 vvi-u.5   100852454   protein OSB2, chloroplastic 
 ppo-u.5   18095520   protein OSB2, chloroplastic 
 mtr-u.5   11436977   protein OSB3, chloroplastic/mitochondrial 
 tae-r.2   123072469   protein OSB2, chloroplastic 
 tae-r.2   123080698   protein OSB2, chloroplastic 
 tae-r.2   123063459   protein OSB2, chloroplastic 
 hvu-r.1   123445488   protein OSB2, chloroplastic-like 
 ghi-r.1   107933321   protein OSB3, chloroplastic/mitochondrial 
 ghi-r.1   107898675   protein OSB3, chloroplastic/mitochondrial 
 bna-r.1   106440403   protein OSB2, chloroplastic-like 
 bna-r.1   106421197   protein OSB2, chloroplastic 
 bna-r.1   106391164   protein OSB3, chloroplastic/mitochondrial 
 sbi-r.1   8062318   protein OSB2, chloroplastic 
 sot-r.1   102586350   protein OSB2, chloroplastic-like 
 cit-r.1   102610125   protein OSB2, chloroplastic 
 bdi-r.1   100831823   protein OSB2, chloroplastic 
 nta-r.1   107764681   protein OSB2, chloroplastic-like 
 nta-r.1   107762478   protein OSB2, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_12g483720v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g483720v5 (cre-r.1 coexpression data)

CoexMap"5728705"


creCHLRE_12g483720v5 | Entrez gene ID : 5728705    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 3 1 1 1 1 2 1 1 1 3 1 2 3 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_001703165.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_001703165.2)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_001703165.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g483720v5
ath-u.5
for
PTAC9
ath-u.5
for
OSB3
ath-u.5
for
OSB4
gma-u.5
for
100788700
sly-u.5
for
101253926
osa-u.5
for
4325759
zma-u.5
for
100278261
bra-r.6
for
103827828
bra-r.6
for
103840276
vvi-u.5
for
100852454
ppo-u.5
for
18095520
mtr-u.5
for
11436977
tae-r.2
for
123072469
tae-r.2
for
123080698
tae-r.2
for
123063459
hvu-r.1
for
123445488
ghi-r.1
for
107933321
ghi-r.1
for
107898675
bna-r.1
for
106440403
bna-r.1
for
106421197
bna-r.1
for
106391164
sbi-r.1
for
8062318
sot-r.1
for
102586350
cit-r.1
for
102610125
bdi-r.1
for
100831823
nta-r.1
for
107764681
nta-r.1
for
107762478


Ortholog ID: 6610
Species cre ath ath ath gma sly osa zma bra bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g483720v5 PTAC9 OSB3 OSB4 LOC100788700 LOC101253926 LOC4325759 LOC100278261 LOC103827828 LOC103840276 LOC100852454 LOC18095520 LOC11436977 LOC123072469 LOC123080698 LOC123063459 LOC123445488 LOC107933321 LOC107898675 LOC106391164 LOC106386359 LOC125600667 LOC8062318 LOC102586350 LOC102610125 LOC100831823 LOC107764681 LOC107762478
Function* uncharacterized protein plastid transcriptionally active 9 organellar single-stranded DNA binding protein 3 organellar single-stranded DNA binding protein 4 protein OSB3, chloroplastic/mitochondrial-like protein OSB2, chloroplastic protein OSB2, chloroplastic Protein OSB2 chloroplastic protein OSB3, chloroplastic/mitochondrial protein OSB4, chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB3, chloroplastic/mitochondrial protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic-like protein OSB3, chloroplastic/mitochondrial protein OSB3, chloroplastic/mitochondrial protein OSB3, chloroplastic/mitochondrial protein OSB3, chloroplastic/mitochondrial protein OSB2, chloroplastic-like protein OSB2, chloroplastic protein OSB2, chloroplastic-like protein OSB2, chloroplastic protein OSB2, chloroplastic protein OSB2, chloroplastic-like protein OSB2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03440 Homologous recombination 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00240 Pyrimidine metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728705 827746 834508 839987 100788700 101253926 4325759 100278261 103827828 103840276 100852454 18095520 11436977 123072469 123080698 123063459 123445488 107933321 107898675 106391164 106386359 125600667 8062318 102586350 102610125 100831823 107764681 107762478
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