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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g484100v5   uncharacterized protein 
 ath-u.5   RPC14   RNApolymerase 14 kDa subunit 
 gma-u.5   100807892   DNA-directed RNA polymerases I and III subunit RPAC2 
 gma-u.5   100500695   uncharacterized LOC100500695 
 sly-u.5   101255651   uncharacterized LOC101255651 
 sly-u.5   101262015   uncharacterized LOC101262015 
 osa-u.5   4351715   uncharacterized LOC4351715 
 zma-u.5   100276725   uncharacterized LOC100276725 
 vvi-u.5   100245061   uncharacterized LOC100245061 
 ppo-u.5   7485677   uncharacterized LOC7485677 
 mtr-u.5   112419899   DNA-directed RNA polymerases I and III subunit RPAC2 
 mtr-u.5   11437781   DNA-directed RNA polymerases I and III subunit RPAC2 

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Top 50 coexpressed genes to CHLRE_12g484100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g484100v5 (cre-r.1 coexpression data)

CoexMap"5728728"


creCHLRE_12g484100v5 | Entrez gene ID : 5728728      
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (12 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (16 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (16 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (175 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042917901.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_042917901.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042917901.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g484100v5

.
ath-u.5
for
RPC14

.
gma-u.5
for
100807892

.
gma-u.5
for
100500695

.
sly-u.5
for
101255651

.
sly-u.5
for
101262015

.
osa-u.5
for
4351715

.
zma-u.5
for
100276725

.
vvi-u.5
for
100245061

.
ppo-u.5
for
7485677

.
mtr-u.5
for
112419899

.
mtr-u.5
for
11437781

.


Ortholog ID: 3433
Species ath gma gma sly sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sbi sot sot cit bdi nta nta
Symbol RPC14 LOC100807892 LOC100500695 LOC101262015 LOC101255651 LOC4351715 LOC100276725 LOC103868028 LOC100245061 LOC7485677 LOC112419899 LOC11437781 LOC123096368 LOC123091400 LOC123447874 LOC121223691 LOC107911446 LOC106451529 CHLRE_12g484100v5 LOC8071688 LOC8082797 LOC102593288 LOC102597561 LOC102623776 LOC100834353 LOC107786875 LOC107828969
Function* RNApolymerase 14 kDa subunit DNA-directed RNA polymerases I and III subunit RPAC2 uncharacterized LOC100500695 uncharacterized LOC101262015 uncharacterized LOC101255651 uncharacterized LOC4351715 uncharacterized LOC100276725 DNA-directed RNA polymerases I and III subunit RPAC2 uncharacterized LOC100245061 uncharacterized LOC7485677 DNA-directed RNA polymerases I and III subunit RPAC2 DNA-directed RNA polymerases I and III subunit RPAC2 DNA-directed RNA polymerases I and III subunit RPAC2 DNA-directed RNA polymerases I and III subunit RPAC2 DNA-directed RNA polymerases I and III subunit RPAC2 protein PAT1 homolog DNA-directed RNA polymerases I and III subunit RPAC2 DNA-directed RNA polymerases I and III subunit RPAC2 uncharacterized protein DNA-directed RNA polymerases I and III subunit RPAC2 uncharacterized LOC8082797 DNA-directed RNA polymerases I and III subunit RPAC2-like DNA-directed RNA polymerases I and III subunit RPAC2-like uncharacterized LOC102623776 DNA-directed RNA polymerases I and III subunit RPAC2 uncharacterized LOC107786875 uncharacterized LOC107828969
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03008 Ribosome biogenesis in eukaryotes 3
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03010 Ribosome 4
sly03020 RNA polymerase 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03010 Ribosome 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03010 Ribosome 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03020 RNA polymerase 4
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
tae03020 RNA polymerase 3
tae00230 Purine metabolism 2
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 4
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00073 Cutin, suberine and wax biosynthesis 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
cit03060 Protein export 2
cit04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 3
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817503 100807892 100500695 101262015 101255651 4351715 100276725 103868028 100245061 7485677 112419899 11437781 123096368 123091400 123447874 121223691 107911446 106451529 5728728 8071688 8082797 102593288 102597561 102623776 100834353 107786875 107828969
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