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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g170750v5   uncharacterized protein 
 ath-u.5   AT5G15750   Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 
 gma-u.5   100798516   U3 small nucleolar ribonucleoprotein protein IMP3 
 gma-u.5   100782389   U3 small nucleolar ribonucleoprotein protein IMP3 
 sly-u.5   101249976   alpha-L RNA-binding motif/ribosomal protein S4 family protein 
 osa-u.5   4337293   uncharacterized LOC4337293 
 zma-u.5   100193155   U3 small nucleolar ribonucleoprotein protein IMP3-like 
 vvi-u.5   100261745   uncharacterized LOC100261745 
 ppo-u.5   18107360   uncharacterized LOC18107360 
 ppo-u.5   18097673   uncharacterized LOC18097673 
 mtr-u.5   11409612   U3 small nucleolar ribonucleoprotein protein IMP3 

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Top 50 coexpressed genes to CHLRE_03g170750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g170750v5 (cre-r.1 coexpression data)

CoexMap"5728940"


creCHLRE_03g170750v5 | Entrez gene ID : 5728940      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (218 genes)  IEA  
GO CC
GO:0034457 [list] [network] Mpp10 complex  (3 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0015935 [list] [network] small ribosomal subunit  (50 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IEA  
GO:0019843 [list] [network] rRNA binding  (36 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_001703317.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  pero 2,  cyto_nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_001703317.1)
Subcellular
localization
TargetP
other 7,  mito 6  (predict for XP_001703317.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g170750v5

.
ath-u.5
for
AT5G15750

.
gma-u.5
for
100798516

.
gma-u.5
for
100782389

.
sly-u.5
for
101249976

.
osa-u.5
for
4337293

.
zma-u.5
for
100193155

.
vvi-u.5
for
100261745

.
ppo-u.5
for
18107360

.
ppo-u.5
for
18097673

.
mtr-u.5
for
11409612

.


Ortholog ID: 7334
Species ath gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT5G15750 LOC100798516 LOC101249976 LOC4337293 LOC100193155 LOC103856160 LOC103851003 LOC100261745 LOC18097673 LOC18107360 LOC11409612 LOC123046978 LOC123190652 LOC123428034 LOC107907364 LOC107907508 LOC106364995 LOC106443125 CHLRE_03g170750v5 LOC8061490 LOC8070276 LOC102598876 LOC102618155 LOC100826196 LOC107772482 LOC107765174
Function* Alpha-L RNA-binding motif/Ribosomal protein S4 family protein U3 small nucleolar ribonucleoprotein protein IMP3 alpha-L RNA-binding motif/ribosomal protein S4 family protein uncharacterized LOC4337293 U3 small nucleolar ribonucleoprotein protein IMP3-like U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 uncharacterized LOC100261745 uncharacterized LOC18097673 uncharacterized LOC18107360 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 uncharacterized protein U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 uncharacterized LOC102618155 U3 small nucleolar ribonucleoprotein protein IMP3 uncharacterized LOC107772482 uncharacterized LOC107765174
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03018 RNA degradation 2
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03008 Ribosome biogenesis in eukaryotes 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831431 100798516 101249976 4337293 100193155 103856160 103851003 100261745 18097673 18107360 11409612 123046978 123190652 123428034 107907364 107907508 106364995 106443125 5728940 8061490 8070276 102598876 102618155 100826196 107772482 107765174
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