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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g219787v5   uncharacterized protein 
 ath-u.5   ABC4   UbiA prenyltransferase family protein 
 gma-u.5   100791902   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 sly-u.5   101248721   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 osa-u.5   4331897   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 zma-u.5   100285808   uncharacterized LOC100285808 
 vvi-u.5   100256517   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 ppo-u.5   7496610   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 mtr-u.5   11410823   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_04g219787v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g219787v5 (cre-r.1 coexpression data)

CoexMap"66053225"


creCHLRE_04g219787v5 | Entrez gene ID : 66053225    
Species cre ath gma sly osa zma vvi ppo mtr sot hvu tae cit sbi ghi bna nta bdi bra
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (22 genes)
cre01240 [list] [network] Biosynthesis of cofactors (149 genes)
GO BP
GO:0009234 [list] [network] menaquinone biosynthetic process  (3 genes)  IEA  
GO:0042372 [list] [network] phylloquinone biosynthetic process  (3 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (1543 genes)  IEA  
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (16 genes)  IEA  
Protein XP_042925218.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  plas 2,  mito 2,  cyto_plas 1,  chlo 1  (predict for XP_042925218.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_042925218.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g219787v5

.
ath-u.5
for
ABC4

.
gma-u.5
for
100791902

.
sly-u.5
for
101248721

.
osa-u.5
for
4331897

.
zma-u.5
for
100285808

.
vvi-u.5
for
100256517

.
ppo-u.5
for
7496610

.
mtr-u.5
for
11410823

.


Ortholog ID: 6155
Species ath sly osa zma bra vvi ppo mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ABC4 LOC101248721 LOC4331897 LOC100285808 LOC103829906 LOC100256517 LOC7496610 LOC11410823 LOC123449669 LOC107887436 LOC107908946 LOC106449951 LOC106435024 CHLRE_04g219787v5 LOC8081915 LOC102602396 LOC102624098 LOC100820840 LOC107780450 LOC107819760
Function* UbiA prenyltransferase family protein 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic uncharacterized LOC100285808 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic uncharacterized protein 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly01240 Biosynthesis of cofactors 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 5
bra00860 Porphyrin metabolism 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 4
vvi03010 Ribosome 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 10
ppo00195 Photosynthesis 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00670 One carbon pool by folate 7
bna01200 Carbon metabolism 6
bna00260 Glycine, serine and threonine metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna01200 Carbon metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00670 One carbon pool by folate 5
bna00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 4
sbi00710 Carbon fixation by Calvin cycle 3
sbi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit01240 Biosynthesis of cofactors 3
cit01200 Carbon metabolism 2
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00460 Cyanoamino acid metabolism 3
nta00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00460 Cyanoamino acid metabolism 3
nta00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842354 101248721 4331897 100285808 103829906 100256517 7496610 11410823 123449669 107887436 107908946 106449951 106435024 66053225 8081915 102602396 102624098 100820840 107780450 107819760
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