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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g305250v5   uncharacterized protein 
 cre-r.1   CHLRE_06g305050v5   uncharacterized protein 
 ath-u.5   AT1G11800   endonuclease/exonuclease/phosphatase family protein 
 gma-u.5   100776999   uncharacterized LOC100776999 
 gma-u.5   100776602   tyrosyl-DNA phosphodiesterase 2-like 
 sly-u.5   101257617   uncharacterized LOC101257617 
 osa-u.5   4352068   uncharacterized LOC4352068 
 zma-u.5   100191228   Endonuclease/Exonuclease/phosphatase family 
 zma-u.5   100502258   uncharacterized LOC100502258 
 bra-r.6   103843222   tyrosyl-DNA phosphodiesterase 2 
 vvi-u.5   100255468   uncharacterized LOC100255468 
 ppo-u.5   18097370   uncharacterized LOC18097370 
 mtr-u.5   11442699   uncharacterized LOC11442699 
 tae-r.2   123136491   uncharacterized LOC123136491 
 tae-r.2   123143970   uncharacterized LOC123143970 
 tae-r.2   123132416   uncharacterized LOC123132416 
 hvu-r.1   123403200   uncharacterized LOC123403200 
 ghi-r.1   107960178   uncharacterized LOC107960178 
 ghi-r.1   121230915   uncharacterized LOC121230915 
 bna-r.1   106435819   tyrosyl-DNA phosphodiesterase 2-like 
 bna-r.1   106415241   tyrosyl-DNA phosphodiesterase 2 
 sbi-r.1   8065672   uncharacterized LOC8065672 
 sot-r.1   102578785   uncharacterized LOC102578785 
 cit-r.1   102625567   uncharacterized LOC102625567 
 bdi-r.1   100841299   uncharacterized LOC100841299 
 bdi-r.1   100827144   tyrosyl-DNA phosphodiesterase 2 
 nta-r.1   107826971   uncharacterized LOC107826971 
 nta-r.1   107814620   uncharacterized LOC107814620 

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Top 50 coexpressed genes to CHLRE_06g305250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g305250v5 (cre-r.1 coexpression data)

CoexMap"66053894"


creCHLRE_06g305250v5 | Entrez gene ID : 66053894    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 2 1 2 1 1 2 1 1 1 1 3 1 2 2 1 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006302 [list] [network] double-strand break repair  (115 genes)  IEA  
GO CC
GO:0016605 [list] [network] PML body  (3 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0070260 [list] [network] 5'-tyrosyl-DNA phosphodiesterase activity  (3 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
Protein XP_042924392.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  mito 1,  cyto 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_042924392.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_042924392.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g305250v5
cre-r.1
for
CHLRE_06g305050v5
ath-u.5
for
AT1G11800
gma-u.5
for
100776999
gma-u.5
for
100776602
sly-u.5
for
101257617
osa-u.5
for
4352068
zma-u.5
for
100191228
zma-u.5
for
100502258
bra-r.6
for
103843222
vvi-u.5
for
100255468
ppo-u.5
for
18097370
mtr-u.5
for
11442699
tae-r.2
for
123136491
tae-r.2
for
123143970
tae-r.2
for
123132416
hvu-r.1
for
123403200
ghi-r.1
for
107960178
ghi-r.1
for
121230915
bna-r.1
for
106435819
bna-r.1
for
106415241
sbi-r.1
for
8065672
sot-r.1
for
102578785
cit-r.1
for
102625567
bdi-r.1
for
100841299
bdi-r.1
for
100827144
nta-r.1
for
107826971
nta-r.1
for
107814620


Ortholog ID: 6696
Species cre cre ath gma gma sly osa zma zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_06g305250v5 CHLRE_06g305050v5 AT1G11800 LOC100776999 LOC100776602 LOC101257617 LOC4352068 LOC100191228 LOC100502258 LOC103843222 LOC100255468 LOC18097370 LOC11442699 LOC123136491 LOC123143970 LOC123132416 LOC123403200 LOC107960178 LOC121230915 LOC106435819 LOC106415241 LOC8065672 LOC102578785 LOC102625567 LOC100841299 LOC100827144 LOC107826971 LOC107814620
Function* uncharacterized protein uncharacterized protein endonuclease/exonuclease/phosphatase family protein uncharacterized LOC100776999 tyrosyl-DNA phosphodiesterase 2-like uncharacterized LOC101257617 uncharacterized LOC4352068 Endonuclease/Exonuclease/phosphatase family uncharacterized LOC100502258 tyrosyl-DNA phosphodiesterase 2 uncharacterized LOC100255468 uncharacterized LOC18097370 uncharacterized LOC11442699 uncharacterized LOC123136491 uncharacterized LOC123143970 uncharacterized LOC123132416 uncharacterized LOC123403200 uncharacterized LOC107960178 uncharacterized LOC121230915 tyrosyl-DNA phosphodiesterase 2-like tyrosyl-DNA phosphodiesterase 2 uncharacterized LOC8065672 uncharacterized LOC102578785 uncharacterized LOC102625567 uncharacterized LOC100841299 tyrosyl-DNA phosphodiesterase 2 uncharacterized LOC107826971 uncharacterized LOC107814620
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 4
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 9
bra03060 Protein export 5
bra04145 Phagosome 4
bra04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi00061 Fatty acid biosynthesis 2
vvi00780 Biotin metabolism 2
vvi01212 Fatty acid metabolism 2
vvi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu01230 Biosynthesis of amino acids 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 6
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00670 One carbon pool by folate 4
nta00999 Biosynthesis of various plant secondary metabolites 4
nta01230 Biosynthesis of amino acids 4
nta01240 Biosynthesis of cofactors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66053894 5716902 837726 100776999 100776602 101257617 4352068 100191228 100502258 103843222 100255468 18097370 11442699 123136491 123143970 123132416 123403200 107960178 121230915 106435819 106415241 8065672 102578785 102625567 100841299 100827144 107826971 107814620
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