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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g507700v5   uncharacterized protein 
 ath-u.5   THO2   THO2 
 gma-u.5   100817413   THO complex subunit 2 
 gma-u.5   100790946   THO complex subunit 2 
 sly-u.5   101261518   THO complex subunit 2 
 osa-u.5   4324336   THO complex subunit 2 
 zma-u.5   103652539   THO complex subunit 2 
 vvi-u.5   109123650   THO complex subunit 2-like 
 vvi-u.5   100254201   THO complex subunit 2 
 ppo-u.5   18104229   THO complex subunit 2 
 ppo-u.5   7455213   THO complex subunit 2 
 mtr-u.5   11435146   THO complex subunit 2 
 mtr-u.5   11410144   THO complex subunit 2 

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Top 50 coexpressed genes to CHLRE_12g507700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g507700v5 (cre-r.1 coexpression data)

CoexMap"66055525"


creCHLRE_12g507700v5 | Entrez gene ID : 66055525    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (27 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (143 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (7 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042918176.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  nucl 2  (predict for XP_042918176.1)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_042918176.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g507700v5

.
ath-u.5
for
THO2

.
gma-u.5
for
100817413

.
gma-u.5
for
100790946

.
sly-u.5
for
101261518

.
osa-u.5
for
4324336

.
zma-u.5
for
103652539

.
vvi-u.5
for
109123650

.
vvi-u.5
for
100254201

.
ppo-u.5
for
18104229

.
ppo-u.5
for
7455213

.
mtr-u.5
for
11435146

.
mtr-u.5
for
11410144

.


Ortholog ID: 6406
Species ath gma gma sly osa zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol THO2 LOC100817413 LOC100790946 LOC101261518 LOC4324336 LOC103652539 LOC103835435 LOC109123650 LOC100254201 LOC18104229 LOC7455213 LOC11435146 LOC11410144 LOC123063066 LOC123072582 LOC123445563 LOC123445203 LOC107909965 LOC107886334 LOC106359234 LOC106400753 CHLRE_12g507700v5 LOC8078728 LOC8084169 LOC102606042 LOC102612717 LOC100843152 LOC100846277 LOC107788337 LOC107822176
Function* THO2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2-like THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2-like THO complex subunit 2-like THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 uncharacterized protein THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2 THO complex subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 3
ath03015 mRNA surveillance pathway 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03082 ATP-dependent chromatin remodeling 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 4
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 4
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03013 Nucleocytoplasmic transport 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 2
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 9
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 10
tae03013 Nucleocytoplasmic transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04120 Ubiquitin mediated proteolysis 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839081 100817413 100790946 101261518 4324336 103652539 103835435 109123650 100254201 18104229 7455213 11435146 11410144 123063066 123072582 123445563 123445203 107909965 107886334 106359234 106400753 66055525 8078728 8084169 102606042 102612717 100843152 100846277 107788337 107822176
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