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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g514250v5   uncharacterized protein 
 ath-u.5   AT1G63490   transcription factor jumonji (jmjC) domain-containing protein 
 gma-u.5   100789512   lysine-specific demethylase 5A 
 gma-u.5   100819576   lysine-specific demethylase rbr-2 
 sly-u.5   101259658   lysine-specific demethylase JMJ17 
 osa-u.5   9271593   lysine-specific demethylase JMJ17 
 zma-u.5   103626493   lysine-specific demethylase 5B 
 vvi-u.5   100261599   lysine-specific demethylase JMJ17 
 ppo-u.5   18097038   lysine-specific demethylase JMJ17 
 mtr-u.5   11429104   lysine-specific demethylase 5B 

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Top 50 coexpressed genes to CHLRE_12g514250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g514250v5 (cre-r.1 coexpression data)

CoexMap"66055556"


creCHLRE_12g514250v5 | Entrez gene ID : 66055556    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006338 [list] [network] chromatin remodeling  (106 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0032454 [list] [network] histone H3K9 demethylase activity  (4 genes)  IEA  
GO:0051864 [list] [network] histone H3K36 demethylase activity  (4 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042918372.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  chlo 1,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_042918372.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042918372.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g514250v5

.
ath-u.5
for
AT1G63490

.
gma-u.5
for
100789512

.
gma-u.5
for
100819576

.
sly-u.5
for
101259658

.
osa-u.5
for
9271593

.
zma-u.5
for
103626493

.
vvi-u.5
for
100261599

.
ppo-u.5
for
18097038

.
mtr-u.5
for
11429104

.


Ortholog ID: 9273
Species ath gma gma sly osa bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G63490 LOC100789512 LOC100819576 LOC101259658 LOC9271593 LOC103838273 LOC100261599 LOC18097038 LOC11429104 LOC123149931 LOC123161019 LOC123413025 LOC107962976 LOC107936696 LOC106390274 LOC106450823 CHLRE_12g514250v5 LOC8066399 LOC102601233 LOC102617380 LOC100829070 LOC107763178 LOC107784173
Function* transcription factor jumonji (jmjC) domain-containing protein lysine-specific demethylase 5A lysine-specific demethylase rbr-2 lysine-specific demethylase JMJ17 lysine-specific demethylase JMJ17 lysine-specific demethylase 5B lysine-specific demethylase JMJ17 lysine-specific demethylase JMJ17 lysine-specific demethylase 5B lysine-specific demethylase 5B lysine-specific demethylase 5B uncharacterized LOC123413025 lysine-specific demethylase 5D lysine-specific demethylase 5D lysine-specific demethylase 5B lysine-specific demethylase 5B uncharacterized protein lysine-specific demethylase 5D lysine-specific demethylase 5B lysine-specific demethylase JMJ17 lysine-specific demethylase 5C lysine-specific demethylase JMJ17-like lysine-specific demethylase JMJ17
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 3
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03083 Polycomb repressive complex 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 5
bna03083 Polycomb repressive complex 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00310 Lysine degradation 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi03015 mRNA surveillance pathway 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842655 100789512 100819576 101259658 9271593 103838273 100261599 18097038 11429104 123149931 123161019 123413025 107962976 107936696 106390274 106450823 66055556 8066399 102601233 102617380 100829070 107763178 107784173
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