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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g602300v5   uncharacterized protein 
 ath-u.5   AT5G66180   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5   100788419   uncharacterized LOC100788419 
 sly-u.5   101244643   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 osa-u.5   4329164   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 zma-u.5   100284258   NOL1/NOP2/sun family protein 
 vvi-u.5   100267747   uncharacterized LOC100267747 
 ppo-u.5   18101092   rRNA (cytosine-C(5))-methyltransferase NOP2C 
 mtr-u.5   11439615   multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b 

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Top 50 coexpressed genes to CHLRE_13g602300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g602300v5 (cre-r.1 coexpression data)

CoexMap"66056090"


creCHLRE_13g602300v5 | Entrez gene ID : 66056090    
Species cre ath gma sly osa zma vvi ppo mtr hvu bna cit bra ghi sbi bdi nta tae sot
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031167 [list] [network] rRNA methylation  (22 genes)  IEA  
GO CC
GO:0005762 [list] [network] mitochondrial large ribosomal subunit  (16 genes)  IEA  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (194 genes)  IEA  
Protein XP_042917792.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 1,  mito 1,  pero 1  (predict for XP_042917792.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_042917792.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g602300v5
ath-u.5
for
AT5G66180
gma-u.5
for
100788419
sly-u.5
for
101244643
osa-u.5
for
4329164
zma-u.5
for
100284258
vvi-u.5
for
100267747
ppo-u.5
for
18101092
mtr-u.5
for
11439615


Ortholog ID: 9197
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_13g602300v5 AT5G66180 LOC100788419 LOC101244643 LOC4329164 LOC100284258 LOC103855353 LOC100267747 LOC18101092 LOC11439615 LOC123156660 LOC123147447 LOC123413401 LOC107936570 LOC107909458 LOC125581610 LOC106406053 LOC8074085 LOC102585220 LOC102624363 LOC104582433 LOC100835950 LOC107798336 LOC107764609
Function* uncharacterized protein S-adenosyl-L-methionine-dependent methyltransferases superfamily protein uncharacterized LOC100788419 rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C NOL1/NOP2/sun family protein probable ribosomal RNA small subunit methyltransferase B uncharacterized LOC100267747 rRNA (cytosine-C(5))-methyltransferase NOP2C multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b ribosomal RNA small subunit methyltransferase B rRNA (cytosine-C(5))-methyltransferase NOP2C ribosomal RNA small subunit methyltransferase B rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C ribosomal RNA small subunit methyltransferase F-like ribosomal RNA small subunit methyltransferase F uncharacterized LOC8074085 uncharacterized LOC102585220 uncharacterized LOC102624363 uncharacterized LOC104582433 uncharacterized LOC100835950 rRNA (cytosine-C(5))-methyltransferase NOP2C rRNA (cytosine-C(5))-methyltransferase NOP2C
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04120 Ubiquitin mediated proteolysis 3
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66056090 836750 100788419 101244643 4329164 100284258 103855353 100267747 18101092 11439615 123156660 123147447 123413401 107936570 107909458 125581610 106406053 8074085 102585220 102624363 104582433 100835950 107798336 107764609
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