ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_13g605050v5	uncharacterized protein
ath-u.5	MET18	ARM repeat superfamily protein
gma-u.5	100788537	MMS19 nucleotide excision repair protein homolog
gma-u.5	100782823	MMS19 nucleotide excision repair protein homolog
sly-u.5	101259141	MMS19 nucleotide excision repair protein homolog
osa-u.5	4342544	MMS19 nucleotide excision repair protein homolog
zma-u.5	103633121	ADP-ribosylation factor GTPase-activating protein AGD3
zma-u.5	103634279	putative methyltransferase At1g22800, mitochondrial
zma-u.5	100217039	uncharacterized LOC100217039
bra-r.6	103854514	MMS19 nucleotide excision repair protein homolog
vvi-u.5	100260012	MMS19 nucleotide excision repair protein homolog
ppo-u.5	18096825	MMS19 nucleotide excision repair protein homolog
mtr-u.5	11433364	MMS19 nucleotide excision repair protein homolog
mtr-u.5	11432373	MMS19 nucleotide excision repair protein homolog
tae-r.2	123164336	MMS19 nucleotide excision repair protein homolog
tae-r.2	123155879	MMS19 nucleotide excision repair protein homolog
tae-r.2	123149347	MMS19 nucleotide excision repair protein homolog
hvu-r.1	123407257	MMS19 nucleotide excision repair protein homolog
ghi-r.1	107937347	MMS19 nucleotide excision repair protein homolog
ghi-r.1	107937284	MMS19 nucleotide excision repair protein homolog
bna-r.1	106429023	MMS19 nucleotide excision repair protein homolog
bna-r.1	106402247	MMS19 nucleotide excision repair protein homolog
sbi-r.1	8060730	MMS19 nucleotide excision repair protein homolog
sot-r.1	102585560	MMS19 nucleotide excision repair protein homolog
cit-r.1	102610725	MMS19 nucleotide excision repair protein homolog
bdi-r.1	100836414	MMS19 nucleotide excision repair protein homolog
nta-r.1	107788467	MMS19 nucleotide excision repair protein homolog
nta-r.1	107826625	MMS19 nucleotide excision repair protein homolog

Annotation

functional annotation

KEGG

GO BP

GO:0016226 [list] [network] iron-sulfur cluster assembly

(21 genes)

IEA

GO CC

GO:0097361 [list] [network] cytosolic [4Fe-4S] assembly targeting complex

(2 genes)

IEA

GO MF

Protein

XP_042917830.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, chlo 1, vacu 1, nucl 1, cyto 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cyto_E.R. 1

(predict for XP_042917830.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042917830.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_13g605050v5	ath-u.5 for MET18	gma-u.5 for 100788537	gma-u.5 for 100782823	sly-u.5 for 101259141	osa-u.5 for 4342544	zma-u.5 for 103633121	zma-u.5 for 103634279	zma-u.5 for 100217039	bra-r.6 for 103854514	vvi-u.5 for 100260012	ppo-u.5 for 18096825	mtr-u.5 for 11433364	mtr-u.5 for 11432373	tae-r.2 for 123164336	tae-r.2 for 123155879	tae-r.2 for 123149347	hvu-r.1 for 123407257	ghi-r.1 for 107937347	ghi-r.1 for 107937284	bna-r.1 for 106429023	bna-r.1 for 106402247	sbi-r.1 for 8060730	sot-r.1 for 102585560	cit-r.1 for 102610725	bdi-r.1 for 100836414	nta-r.1 for 107788467	nta-r.1 for 107826625

Ortholog

Ortholog ID: 8644

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

MET18

Function^*

uncharacterized protein

ARM repeat superfamily protein

MMS19 nucleotide excision repair protein homolog

ADP-ribosylation factor GTPase-activating protein AGD3

putative methyltransferase At1g22800, mitochondrial

uncharacterized LOC100217039

MMS19 nucleotide excision repair protein homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03008	Ribosome biogenesis in eukaryotes	2
ath03020	RNA polymerase	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03010	Ribosome	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4
osa03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	6
zma03008	Ribosome biogenesis in eukaryotes	2
zma00970	Aminoacyl-tRNA biosynthesis	2
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	4
bra03040	Spliceosome	2
bra03030	DNA replication	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	3
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	4
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6
ghi00040	Pentose and glucuronate interconversions	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6
ghi00040	Pentose and glucuronate interconversions	2
ghi00052	Galactose metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	6
cit03020	RNA polymerase	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	5
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03020	RNA polymerase	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

66056116

834864

100788537

100782823

101259141

4342544

103633121

103634279

100217039

103854514

100260012

18096825

11433364

11432373

123164336

123155879

123149347

123407257

107937347

107937284

106429023

106402247

8060730

102585560

102610725

100836414

107788467

107826625

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_13g605050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g605050v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	3	1	1	1	2	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_13g605050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g605050v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**