ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7453743	protein argonaute 4A
ppo-r.4	7453743	protein argonaute 4A
ppo-m.4	7453743	protein argonaute 4A
ppo-u.5	18094926	protein argonaute 4
ppo-u.5	7455965	protein argonaute 16
ppo-u.5	7479625	protein argonaute 4A
gma-u.5	100820376	protein argonaute 4
gma-u.5	100792105	protein argonaute 4
mtr-u.5	11433384	protein argonaute 4
mtr-u.5	11433386	protein argonaute 4
ath-u.5	AGO4	Argonaute family protein
ath-u.5	AGO6	Argonaute family protein
vvi-u.5	100260151	protein argonaute 4A
vvi-u.5	100243183	protein argonaute 16
sly-u.5	AGO4B	Argonaute 4B
sly-u.5	101246438	protein argonaute 4-like
sly-u.5	AGO4D	Argonaute 4D
osa-u.5	4324438	protein argonaute 4A-like
osa-u.5	4335025	protein argonaute 4B-like
osa-u.5	4342886	protein argonaute 16-like
zma-u.5	100383316	argonaute104
zma-u.5	100217027	uncharacterized LOC100217027

Annotation

functional annotation

KEGG

GO BP

GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing

(18 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(6111 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding	(1480 genes)	IEA
GO:0005515 [list] [network] protein binding	(4916 genes)	IEA

Protein

XP_002323196.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, cyto 1, vacu 1

(predict for XP_002323196.2)

Subcellular
localization
TargetP

other 6, chlo 5

(predict for XP_002323196.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7453743	ppo-r.4 for 7453743	ppo-m.4 for 7453743	ppo-u.5 for 18094926	ppo-u.5 for 7455965	ppo-u.5 for 7479625	gma-u.5 for 100820376	gma-u.5 for 100792105	mtr-u.5 for 11433384	mtr-u.5 for 11433386	ath-u.5 for AGO4	ath-u.5 for AGO6	vvi-u.5 for 100260151	vvi-u.5 for 100243183	sly-u.5 for AGO4B	sly-u.5 for 101246438	sly-u.5 for AGO4D	osa-u.5 for 4324438	osa-u.5 for 4335025	osa-u.5 for 4342886	zma-u.5 for 100383316	zma-u.5 for 100217027

Ortholog

Ortholog ID: 1140

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

AGO4

AGO6

AGO4D

Function^*

protein argonaute 4A

protein argonaute 4

protein argonaute 6

protein argonaute 16

Argonaute family protein

protein argonaute 6

protein argonaute 9

protein argonaute 4A

protein argonaute 4

protein argonaute 6

protein argonaute 9

protein argonaute 4B-like

protein argonaute 4-like

Argonaute 4D

protein argonaute 16-like

protein argonaute 4-like

protein argonaute 4A-like

protein argonaute 16-like

argonaute104

protein argonaute 4B

protein argonaute 4A

protein argonaute 16-like

protein argonaute 4B

protein argonaute 16

protein argonaute 4A

protein argonaute 16

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	5
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr03440	Homologous recombination	2
mtr03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3
ath03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath03460	Fanconi anemia pathway	2
ath03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	9
bra03420	Nucleotide excision repair	3
bra03430	Mismatch repair	3
bra03460	Fanconi anemia pathway	3
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4
ghi00220	Arginine biosynthesis	2
ghi00230	Purine metabolism	2
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00052	Galactose metabolism	2
sly00500	Starch and sucrose metabolism	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03013	Nucleocytoplasmic transport	3
osa03082	ATP-dependent chromatin remodeling	2
osa03015	mRNA surveillance pathway	2
osa03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5
hvu03030	DNA replication	2
hvu03410	Base excision repair	2
hvu03420	Nucleotide excision repair	2
hvu03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	2
sbi03410	Base excision repair	2
sbi03420	Nucleotide excision repair	2
sbi03430	Mismatch repair	2
sbi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03015	mRNA surveillance pathway	3

Expression

Expression pattern

Entrez Gene ID^*

7453743

7479625

100792105

100778875

11439465

817246

817856

103857461

103851403

100260151

107959046

107943176

106388008

106425688

102615576

102622330

101248049

102583338

107784197

4324438

4342886

100383316

123150147

123443511

123395895

8066572

8061215

100845074

100828729

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7453743 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7453743 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	2	2	2	2	3	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7453743 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7453743 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**