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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7454456   transcription factor bHLH36 
 gma-u.5   100780888   transcription factor bHLH118 
 gma-u.5   100795953   transcription factor bHLH118 
 mtr-u.5   25479498   transcription factor bHLH36 
 mtr-u.5   25479499   transcription factor bHLH118 
 mtr-u.5   11422874   transcription factor bHLH118 
 ath-u.5   AT4G25400   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT5G51780   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sly-u.5   101245065   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sly-u.5   101267867   transcription factor bHLH36-like 

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Top 50 coexpressed genes to 7454456 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454456 (ppo-m.4 coexpression data)

CoexMap"7454456"


ppoLOC7454456 | Entrez gene ID : 7454456    
Species ppo gma mtr ath sly bdi hvu bra vvi cit bna sbi ghi osa sot nta cre tae zma
Paralog 1 2 3 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (481 genes)  IEA  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription regulator complex  (103 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (292 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (338 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (520 genes)  IEA  
Protein XP_002321864.1 [sequence] [blastp]
XP_024442312.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  extr 1  (predict for XP_002321864.1)
nucl 6,  cyto 2,  extr 1  (predict for XP_024442312.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002321864.1)
other 8  (predict for XP_024442312.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7454456
gma-u.5
for
100780888
gma-u.5
for
100795953
mtr-u.5
for
25479498
mtr-u.5
for
25479499
mtr-u.5
for
11422874
ath-u.5
for
AT4G25400
ath-u.5
for
AT4G25410
ath-u.5
for
AT5G51780
sly-u.5
for
101245065
sly-u.5
for
101267867


Ortholog ID: 2233
Species gma mtr mtr ath ath bra bra ghi cit sly sly sot sot
Symbol LOC100795953 LOC25479498 LOC25479499 AT5G51780 AT5G51790 LOC103832862 LOC103861555 LOC107945011 LOC102631004 LOC101245065 LOC101267867 LOC102584358 LOC102582117
Function* transcription factor bHLH118 transcription factor bHLH36 transcription factor bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH36-like transcription factor bHLH118 transcription factor bHLH118 transcription factor bHLH36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH36-like transcription factor bHLH36-like transcription factor bHLH118-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 4
sot02010 ABC transporters 2
sot04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100795953 25479498 25479499 835252 835253 103832862 103861555 107945011 102631004 101245065 101267867 102584358 102582117
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