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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7455408   pentatricopeptide repeat-containing protein At2g34370, mitochondrial 
 ppo-r.4   7455408   pentatricopeptide repeat-containing protein At2g34370, mitochondrial 
 gma-u.5   100799560   pentatricopeptide repeat-containing protein At4g32450, mitochondrial 
 gma-u.5   100781261   pentatricopeptide repeat-containing protein At4g32450, mitochondrial 
 mtr-u.5   11414006   pentatricopeptide repeat-containing protein At2g25580 
 mtr-u.5   11439350   pentatricopeptide repeat-containing protein At2g25580-like 
 mtr-u.5   25482910   pentatricopeptide repeat-containing protein At2g25580 
 ath-u.5   MEF8   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   MEF8S   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100254270   pentatricopeptide repeat-containing protein At4g32450, mitochondrial 
 sly-u.5   101243708   pentatricopeptide repeat-containing protein 
 osa-u.5   4327881   pentatricopeptide repeat-containing protein At4g32450, mitochondrial 
 zma-u.5   103651234   pentatricopeptide repeat-containing protein At4g32450, mitochondrial 

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Top 50 coexpressed genes to 7455408 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7455408 (ppo-u.5 coexpression data)

CoexMap"7455408"


ppoLOC7455408 | Entrez gene ID : 7455408    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 3 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024441191.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 1,  chlo 1,  cyto_mito 1,  cyto 1,  cysk 1  (predict for XP_024441191.2)
Subcellular
localization
TargetP
scret 5  (predict for XP_024441191.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7455408

.
ppo-r.4
for
7455408

.
gma-u.5
for
100799560

.
gma-u.5
for
100781261

.
mtr-u.5
for
11414006

.
mtr-u.5
for
11439350

.
mtr-u.5
for
25482910

.
ath-u.5
for
MEF8

.
ath-u.5
for
MEF8S

.
vvi-u.5
for
100254270

.
sly-u.5
for
101243708

.
osa-u.5
for
4327881

.
zma-u.5
for
103651234

.


Ortholog ID: 5952
Species ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G29710 LOC100799560 LOC100781261 LOC101243708 LOC4327881 LOC103651234 LOC103842177 LOC103850933 LOC100254270 LOC7455408 LOC25482910 LOC11414006 LOC123079087 LOC123070674 LOC123444352 LOC107945289 LOC107927627 LOC106368556 LOC106368324 LOC8075546 LOC102581114 LOC102610187 LOC100842540 LOC107775836 LOC107804092
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At2g25580 pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At2g34370, mitochondrial pentatricopeptide repeat-containing protein At2g25580 pentatricopeptide repeat-containing protein At2g25580 pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At2g25580 pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial pentatricopeptide repeat-containing protein At4g32450, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 11
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839848 100799560 100781261 101243708 4327881 103651234 103842177 103850933 100254270 7455408 25482910 11414006 123079087 123070674 123444352 107945289 107927627 106368556 106368324 8075546 102581114 102610187 100842540 107775836 107804092
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