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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7457943   DNA mismatch repair protein PMS1 
 ppo-r.4   7457943   DNA mismatch repair protein PMS1 
 ppo-m.4   7457943   DNA mismatch repair protein PMS1 
 gma-u.5   100802535   DNA mismatch repair protein PMS1 
 gma-u.5   100793891   DNA mismatch repair protein PMS1 
 mtr-u.5   11414900   DNA mismatch repair protein PMS1 
 ath-u.5   PMS1   DNA mismatch repair protein 
 vvi-u.5   100255596   DNA mismatch repair protein PMS1 
 sly-u.5   101258001   DNA mismatch repair protein PMS1 
 osa-u.5   4329835   DNA mismatch repair protein PMS1 
 zma-u.5   103653697   DNA mismatch repair protein PMS1 

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Top 50 coexpressed genes to 7457943 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7457943 (ppo-u.5 coexpression data)

CoexMap"7457943"


ppoLOC7457943 | Entrez gene ID : 7457943    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03430 [list] [network] Mismatch repair (40 genes)
pop03460 [list] [network] Fanconi anemia pathway (47 genes)
GO BP
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO CC
GO:0032389 [list] [network] MutLalpha complex  (2 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (16 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002321013.2 [sequence] [blastp]
XP_024440171.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_002321013.2)
cyto 4,  nucl 4,  chlo 1  (predict for XP_024440171.2)
Subcellular
localization
TargetP
other 4  (predict for XP_002321013.2)
other 4  (predict for XP_024440171.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7457943

.
ppo-r.4
for
7457943

.
ppo-m.4
for
7457943

.
gma-u.5
for
100802535

.
gma-u.5
for
100793891

.
mtr-u.5
for
11414900

.
ath-u.5
for
PMS1

.
vvi-u.5
for
100255596

.
sly-u.5
for
101258001

.
osa-u.5
for
4329835

.
zma-u.5
for
103653697

.


Ortholog ID: 9033
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PMS1 LOC100793891 LOC100802535 LOC101258001 LOC4329835 LOC103653697 LOC103868208 LOC100255596 LOC7457943 LOC11414900 LOC123127556 LOC123137302 LOC123401073 LOC107946086 LOC107931240 LOC106348839 LOC106399800 CHLRE_04g227000v5 LOC8055441 LOC102596485 LOC102625172 LOC100824722 LOC107818778 LOC107787641
Function* DNA mismatch repair protein DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1-like DNA mismatch repair protein PMS1-like uncharacterized protein DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1 DNA mismatch repair protein PMS1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03430 Mismatch repair 3
ath03410 Base excision repair 3
ath03450 Non-homologous end-joining 3
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 2
gma03460 Fanconi anemia pathway 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 8
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 6
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03410 Base excision repair 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03430 Mismatch repair 3
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr04120 Ubiquitin mediated proteolysis 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03430 Mismatch repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 2
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 14
bna03430 Mismatch repair 3
bna03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 3
nta03460 Fanconi anemia pathway 3
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827997 100793891 100802535 101258001 4329835 103653697 103868208 100255596 7457943 11414900 123127556 123137302 123401073 107946086 107931240 106348839 106399800 5717917 8055441 102596485 102625172 100824722 107818778 107787641
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