ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7458190	beta-adaptin-like protein B
ppo-r.4	7458190	beta-adaptin-like protein B
ppo-m.4	7458190	beta-adaptin-like protein B
ppo-u.5	7479302	beta-adaptin-like protein C
gma-u.5	100807007	beta-adaptin-like protein C
gma-u.5	100784577	beta-adaptin-like protein C
gma-u.5	100777522	beta-adaptin-like protein C
mtr-u.5	11443257	beta-adaptin-like protein C
ath-u.5	AT4G11380	Adaptin family protein
ath-u.5	AT4G23460	Adaptin family protein
vvi-u.5	100241708	beta-adaptin-like protein B
sly-u.5	101252011	beta-adaptin-like protein C
osa-u.5	4332864	beta-adaptin-like protein C
zma-u.5	103639126	beta-adaptin-like protein C
zma-u.5	103634981	beta-adaptin-like protein C

Annotation

functional annotation

KEGG

pop04142 [list] [network] Lysosome (97 genes)

GO BP

GO:0006886 [list] [network] intracellular protein transport	(350 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(540 genes)	IEA

GO CC

GO:0030131 [list] [network] clathrin adaptor complex	(19 genes)	IEA
GO:0030117 [list] [network] membrane coat	(91 genes)	IEA

GO MF

GO:0030276 [list] [network] clathrin binding

(51 genes)

IEA

Protein

XP_002304511.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 2, nucl 1, vacu 1, E.R. 1, cysk 1, cysk_nucl 1, E.R._vacu 1

(predict for XP_002304511.1)

Subcellular
localization
TargetP

other 9

(predict for XP_002304511.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7458190	ppo-r.4 for 7458190	ppo-m.4 for 7458190	ppo-u.5 for 7479302	gma-u.5 for 100807007	gma-u.5 for 100784577	gma-u.5 for 100777522	mtr-u.5 for 11443257	ath-u.5 for AT4G11380	ath-u.5 for AT4G23460	vvi-u.5 for 100241708	sly-u.5 for 101252011	osa-u.5 for 4332864	zma-u.5 for 103639126	zma-u.5 for 103634981

Ortholog

Ortholog ID: 6603

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

beta-adaptin-like protein C

beta-adaptin-like protein B

beta-adaptin-like protein C

Adaptin family protein

beta-adaptin-like protein B

beta-adaptin-like protein C

beta-adaptin-like protein B

beta-adaptin-like protein C

beta-adaptin-like protein B

beta-adaptin-like protein C

beta-adaptin-like protein B

beta-adaptin-like protein C

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	4
ppo00541	Biosynthesis of various nucleotide sugars	4
ppo01250	Biosynthesis of nucleotide sugars	4
ppo05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	4
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	6
ath04142	Lysosome	4
ath05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	4
ath04141	Protein processing in endoplasmic reticulum	3
ath04144	Endocytosis	3
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi04144	Endocytosis	2
vvi01200	Carbon metabolism	2
vvi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4
ghi04142	Lysosome	3
ghi05100	Bacterial invasion of epithelial cells	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi04142	Lysosome	3
ghi05100	Bacterial invasion of epithelial cells	2
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna00010	Glycolysis / Gluconeogenesis	2
bna00020	Citrate cycle (TCA cycle)	2
bna00620	Pyruvate metabolism	2
bna00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	2
bna00010	Glycolysis / Gluconeogenesis	2
bna00020	Citrate cycle (TCA cycle)	2
bna00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04144	Endocytosis	3
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	3
sly04145	Phagosome	3
sly04144	Endocytosis	3
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	5
sot04142	Lysosome	4
sot04141	Protein processing in endoplasmic reticulum	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta04142	Lysosome	2
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta04142	Lysosome	2
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	4
osa04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	6
zma04144	Endocytosis	5
zma05100	Bacterial invasion of epithelial cells	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	7
tae04144	Endocytosis	4
tae05100	Bacterial invasion of epithelial cells	4
tae00562	Inositol phosphate metabolism	2
tae04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	6
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae04144	Endocytosis	3
tae05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4
hvu03015	mRNA surveillance pathway	2
hvu04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	3
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	5
cre04142	Lysosome	3

Expression

Expression pattern

Entrez Gene ID^*

7479302

7458190

100777522

100807007

11443257

828445

826741

103833875

103861398

100241708

121215594

107941520

106440526

106422371

102621964

101252011

102590622

107805886

107832035

4332864

103634981

103639126

123086170

123097478

123448610

8155720

100836681

5722887

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7458190 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7458190 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	4	3	1	2	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7458190 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7458190 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**