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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7460970   SWI/SNF complex subunit SWI3C 
 ppo-r.4   7460970   SWI/SNF complex subunit SWI3C 
 ppo-m.4   7460970   SWI/SNF complex subunit SWI3C 
 ppo-u.5   18096212   SWI/SNF complex subunit SWI3C 
 gma-u.5   732600   SWI/SNF complex subunit SWI3C 
 gma-u.5   100790286   SWI/SNF complex subunit SWI3C 
 gma-u.5   100792929   SWI/SNF complex subunit SWI3C 
 mtr-u.5   11422202   SWI/SNF complex subunit SWI3C 
 ath-u.5   SWI3C   SWITCH/sucrose nonfermenting 3C 
 vvi-u.5   100253973   SWI/SNF complex subunit SWI3C 
 sly-u.5   SWI3C   SWI/SNF complex subunit SWI3C 
 osa-u.5   9266524   SWI/SNF complex subunit SWI3C homolog 
 osa-u.5   4349954   SWI/SNF complex subunit SWI3C 
 zma-u.5   100216783   Switch/sucrose nonfermenting 3C 
 zma-u.5   100279731   uncharacterized LOC100279731 

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Top 50 coexpressed genes to 7460970 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7460970 (ppo-u.5 coexpression data)

CoexMap"7460970"


ppoLOC7460970 | Entrez gene ID : 7460970    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03082 [list] [network] ATP-dependent chromatin remodeling (85 genes)
GO BP
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002306648.2 [sequence] [blastp]
XP_024457464.2 [sequence] [blastp]
XP_024457465.2 [sequence] [blastp]
XP_052309133.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  nucl 2,  E.R._plas 2,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_002306648.2)
E.R. 4,  nucl 2,  E.R._plas 2,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_024457464.2)
E.R. 4,  nucl 2,  E.R._plas 2,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_024457465.2)
E.R. 4,  nucl 2,  E.R._plas 2,  cysk_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_052309133.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002306648.2)
other 7  (predict for XP_024457464.2)
other 7  (predict for XP_024457465.2)
other 7  (predict for XP_052309133.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7460970

.
ppo-r.4
for
7460970

.
ppo-m.4
for
7460970

.
ppo-u.5
for
18096212

.
gma-u.5
for
732600

.
gma-u.5
for
100790286

.
gma-u.5
for
100792929

.
mtr-u.5
for
11422202

.
ath-u.5
for
SWI3C

.
vvi-u.5
for
100253973

.
sly-u.5
for
SWI3C

.
osa-u.5
for
9266524

.
osa-u.5
for
4349954

.
zma-u.5
for
100216783

.
zma-u.5
for
100279731

.


Ortholog ID: 5202
Species ath gma gma sly osa osa zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol SWI3C LOC100790286 LOC100792929 SWI3C LOC4349954 LOC9266524 LOC100279731 LOC103835734 LOC103873013 LOC100253973 LOC18096212 LOC7460970 LOC11422202 LOC123102839 LOC123111060 LOC123447935 LOC123451881 LOC107951483 LOC107905227 LOC106446602 LOC106401329 CHLRE_08g364050v5 LOC8079896 LOC8079740 LOC102579842 LOC102615206 LOC100826600 LOC107810873 LOC107775805
Function* SWITCH/sucrose nonfermenting 3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C homolog uncharacterized LOC100279731 SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C homolog SWI/SNF complex subunit SWI3C homolog SWI/SNF complex subunit SWI3C homolog SWI/SNF complex subunit SWI3C homolog SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C uncharacterized protein SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C SWI/SNF complex subunit SWI3C-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03040 Spliceosome 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03018 RNA degradation 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03022 Basal transcription factors 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03250 Viral life cycle - HIV-1 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
hvu03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 10
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 10
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838774 100790286 100792929 101264940 4349954 9266524 100279731 103835734 103873013 100253973 18096212 7460970 11422202 123102839 123111060 123447935 123451881 107951483 107905227 106446602 106401329 66054330 8079896 8079740 102579842 102615206 100826600 107810873 107775805
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