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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7462881   protein DCL, chloroplastic 
 ppo-r.4   7462881   protein DCL, chloroplastic 
 ppo-u.5   18104884   protein DCL, chloroplastic 
 gma-u.5   100527410   uncharacterized LOC100527410 
 gma-u.5   100306718   uncharacterized LOC100306718 
 mtr-u.5   11435199   protein DCL homolog, chloroplastic 
 ath-u.5   AT1G45230   DCL protein (DUF3223) 
 vvi-u.5   100245587   protein DCL, chloroplastic-like 
 vvi-u.5   100252324   protein DCL homolog, chloroplastic 
 sly-u.5   DCL   protein DCL, chloroplastic 
 osa-u.5   4330836   protein DCL homolog, chloroplastic 
 zma-u.5   100273638   uncharacterized LOC100273638 

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Top 50 coexpressed genes to 7462881 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7462881 (ppo-u.5 coexpression data)

CoexMap"7462881"


ppoLOC7462881 | Entrez gene ID : 7462881    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1901259 [list] [network] chloroplast rRNA processing  (8 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (99 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
Protein XP_002302436.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  E.R. 1,  E.R._vacu 1  (predict for XP_002302436.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002302436.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7462881

.
ppo-r.4
for
7462881

.
ppo-u.5
for
18104884

.
gma-u.5
for
100527410

.
gma-u.5
for
100306718

.
mtr-u.5
for
11435199

.
ath-u.5
for
AT1G45230

.
vvi-u.5
for
100245587

.
vvi-u.5
for
100252324

.
sly-u.5
for
DCL

.
osa-u.5
for
4330836

.
zma-u.5
for
100273638

.


Ortholog ID: 8734
Species ath gma gma sly osa zma vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G45230 LOC100306718 LOC100527410 DCL LOC4330836 LOC100273638 LOC100245587 LOC100252324 LOC18104884 LOC7462881 LOC11435199 LOC123128585 LOC123138456 LOC123402598 LOC107910223 LOC107910745 LOC106371875 LOC106380623 LOC8078921 LOC102595787 LOC102609741 LOC100833797 LOC107824386 LOC107794355
Function* DCL protein (DUF3223) uncharacterized LOC100306718 uncharacterized LOC100527410 protein DCL, chloroplastic protein DCL homolog, chloroplastic uncharacterized LOC100273638 protein DCL, chloroplastic-like protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic protein DCL homolog, chloroplastic-like protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL homolog, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic protein DCL, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 4
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna00670 One carbon pool by folate 4
bna00785 Lipoic acid metabolism 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta00450 Selenocompound metabolism 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00450 Selenocompound metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841096 100306718 100527410 544019 4330836 100273638 100245587 100252324 18104884 7462881 11435199 123128585 123138456 123402598 107910223 107910745 106371875 106380623 8078921 102595787 102609741 100833797 107824386 107794355
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