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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7462938   D-amino-acid transaminase, chloroplastic 
 ppo-r.4   7462938   D-amino-acid transaminase, chloroplastic 
 ppo-m.4   7462938   D-amino-acid transaminase, chloroplastic 
 ppo-u.5   7460800   D-amino-acid transaminase, chloroplastic 
 gma-u.5   100794026   D-amino-acid transaminase, chloroplastic 
 gma-u.5   100798871   pyridoxaL 5'-phosphate dependent enzymes class IV superfamily protein 
 mtr-u.5   25482253   D-amino-acid transaminase, chloroplastic 
 mtr-u.5   25487305   D-amino-acid transaminase, chloroplastic 
 ath-u.5   ADCL   D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 
 bra-r.6   103856728   D-amino-acid transaminase, chloroplastic 
 vvi-u.5   100255645   D-amino-acid transaminase, chloroplastic 
 vvi-u.5   100266456   D-amino-acid transaminase, chloroplastic 
 ghi-r.1   107963323   D-amino-acid transaminase, chloroplastic 
 ghi-r.1   107901554   D-amino-acid transaminase, chloroplastic 
 bna-r.1   106383599   D-amino-acid transaminase, chloroplastic-like 
 bna-r.1   125598943   D-amino-acid transaminase, chloroplastic-like 
 cit-r.1   102619799   D-amino-acid transaminase, chloroplastic 
 cit-r.1   102618166   D-amino-acid transaminase, chloroplastic-like 
 sly-u.5   778238   4-amino-4-deoxychorismate lyase 
 sly-u.5   101261729   D-amino-acid transaminase, chloroplastic-like 
 sot-r.1   102587211   D-amino-acid transaminase, chloroplastic 
 sot-r.1   102598500   D-amino-acid transaminase, chloroplastic-like 
 nta-r.1   107830444   D-amino-acid transaminase, chloroplastic-like 
 nta-r.1   107826702   D-amino-acid transaminase, chloroplastic-like 
 nta-r.1   107788726   D-amino-acid transaminase, chloroplastic 
 osa-u.5   4338203   D-amino-acid transaminase, chloroplastic 
 osa-u.5   4328992   D-amino-acid transaminase, chloroplastic 
 osa-u.5   4326358   D-amino-acid transaminase, chloroplastic 
 zma-u.5   103626932   D-amino-acid transaminase, chloroplastic 
 zma-u.5   100192017   uncharacterized LOC100192017 
 tae-r.2   123127210   D-amino-acid transaminase, chloroplastic 
 tae-r.2   123060845   D-amino-acid transaminase, chloroplastic 
 tae-r.2   123136809   D-amino-acid transaminase, chloroplastic 
 hvu-r.1   123439700   D-amino-acid transaminase, chloroplastic-like 
 hvu-r.1   123403598   D-amino-acid transaminase, chloroplastic-like 
 sbi-r.1   8059092   D-amino-acid transaminase, chloroplastic 
 sbi-r.1   8066657   D-amino-acid transaminase, chloroplastic 
 sbi-r.1   8078079   D-amino-acid transaminase, chloroplastic 
 bdi-r.1   100841858   D-amino-acid transaminase, chloroplastic 
 bdi-r.1   100846388   D-amino-acid transaminase, chloroplastic 
 cre-r.1   CHLRE_13g576400v5   uncharacterized protein 

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Top 50 coexpressed genes to 7462938 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7462938 (ppo-u.5 coexpression data)

CoexMap"7462938"


ppoLOC7462938 | Entrez gene ID : 7462938    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 1 1 2 2 2 2 2 2 3 3 2 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00790 [list] [network] Folate biosynthesis (37 genes)
pop01240 [list] [network] Biosynthesis of cofactors (298 genes)
GO BP
GO:0019752 [list] [network] carboxylic acid metabolic process  (670 genes)  IEA  
GO CC
GO MF
GO:0003824 [list] [network] catalytic activity  (9959 genes)  IEA  
Protein XP_002324812.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1,  mito 1,  vacu 1  (predict for XP_002324812.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002324812.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7462938
ppo-r.4
for
7462938
ppo-m.4
for
7462938
ppo-u.5
for
7460800
gma-u.5
for
100794026
gma-u.5
for
100798871
mtr-u.5
for
25482253
mtr-u.5
for
25487305
ath-u.5
for
ADCL
bra-r.6
for
103856728
vvi-u.5
for
100255645
vvi-u.5
for
100266456
ghi-r.1
for
107963323
ghi-r.1
for
107901554
bna-r.1
for
106383599
bna-r.1
for
125598943
cit-r.1
for
102619799
cit-r.1
for
102618166
sly-u.5
for
778238
sly-u.5
for
101261729
sot-r.1
for
102587211
sot-r.1
for
102598500
nta-r.1
for
107830444
nta-r.1
for
107826702
nta-r.1
for
107788726
osa-u.5
for
4338203
osa-u.5
for
4328992
osa-u.5
for
4326358
zma-u.5
for
103626932
zma-u.5
for
100192017
tae-r.2
for
123127210
tae-r.2
for
123060845
tae-r.2
for
123136809
hvu-r.1
for
123439700
hvu-r.1
for
123403598
sbi-r.1
for
8059092
sbi-r.1
for
8066657
sbi-r.1
for
8078079
bdi-r.1
for
100841858
bdi-r.1
for
100846388
cre-r.1
for
CHLRE_13g576400v5


Ortholog ID: 3737
Species ppo ppo gma gma mtr mtr ath bra vvi vvi ghi ghi bna bna bna cit cit sly sly sot sot nta nta nta osa osa osa zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol LOC7462938 LOC7460800 LOC100798871 LOC100806511 LOC25482253 LOC25487305 ADCL LOC103856728 LOC100255645 LOC100266456 LOC107963323 LOC107901554 LOC106383599 LOC125598943 LOC106436782 LOC102619799 LOC102618166 LOC778238 LOC101261729 LOC102587211 LOC102598500 LOC107830444 LOC107826702 LOC107768109 LOC4338203 LOC4328992 LOC4326358 LOC103626932 LOC100192017 LOC123136809 LOC123077932 LOC123144294 LOC123439700 LOC123403598 LOC8059092 LOC8066657 LOC8078079 LOC100841858 LOC100846388 CHLRE_13g576400v5
Function* D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic pyridoxaL 5'-phosphate dependent enzymes class IV superfamily protein D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic-like 4-amino-4-deoxychorismate lyase D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic uncharacterized LOC100192017 D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic-like D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic D-amino-acid transaminase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00071 Fatty acid degradation 3
ppo01200 Carbon metabolism 3
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00592 alpha-Linolenic acid metabolism 2
ppo01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00030 Pentose phosphate pathway 4
gma00710 Carbon fixation by Calvin cycle 4
gma01200 Carbon metabolism 4
gma01230 Biosynthesis of amino acids 4
gma00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 2
ath01200 Carbon metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00071 Fatty acid degradation 2
vvi01240 Biosynthesis of cofactors 2
vvi00330 Arginine and proline metabolism 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00071 Fatty acid degradation 2
vvi01212 Fatty acid metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00030 Pentose phosphate pathway 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 9
bna00240 Pyrimidine metabolism 6
bna01232 Nucleotide metabolism 6
bna00230 Purine metabolism 4
bna04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 4
bna03010 Ribosome 4
bna00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 4
bna03010 Ribosome 4
bna00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 7
sly01210 2-Oxocarboxylic acid metabolism 5
sly01240 Biosynthesis of cofactors 3
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00051 Fructose and mannose metabolism 2
sly00052 Galactose metabolism 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00073 Cutin, suberine and wax biosynthesis 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 4
nta00790 Folate biosynthesis 2
nta00051 Fructose and mannose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 3
osa00071 Fatty acid degradation 3
osa03082 ATP-dependent chromatin remodeling 2
osa03083 Polycomb repressive complex 2
osa00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 6
osa00710 Carbon fixation by Calvin cycle 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00260 Glycine, serine and threonine metabolism 2
osa00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00790 Folate biosynthesis 3
tae00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00940 Phenylpropanoid biosynthesis 2
tae00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00790 Folate biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 3
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00790 Folate biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7462938 7460800 100798871 100806511 25482253 25487305 835895 103856728 100255645 100266456 107963323 107901554 106383599 125598943 106436782 102619799 102618166 778238 101261729 102587211 102598500 107830444 107826702 107768109 4338203 4328992 4326358 103626932 100192017 123136809 123077932 123144294 123439700 123403598 8059092 8066657 8078079 100841858 100846388 5719241
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