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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7464311   GRF1-interacting factor 3 
 ppo-r.4   7464311   GRF1-interacting factor 3 
 ppo-m.4   7464311   GRF1-interacting factor 3 
 ppo-u.5   7487734   GRF1-interacting factor 3 
 ppo-u.5   7487688   GRF1-interacting factor 1 
 ppo-u.5   18108068   GRF1-interacting factor 1 
 gma-u.5   100812917   GRF1-interacting factor 1-like 
 gma-u.5   100809843   GRF1-interacting factor 1 
 mtr-u.5   25499695   GRF1-interacting factor 1 
 mtr-u.5   25500636   GRF1-interacting factor 3 
 ath-u.5   GIF3   GRF1-interacting factor 3 
 ath-u.5   AN3   SSXT family protein 
 ath-u.5   GIF2   GRF1-interacting factor 2 
 vvi-u.5   100262678   GRF1-interacting factor 3 
 vvi-u.5   100257141   GRF1-interacting factor 2 
 vvi-u.5   100253609   GRF1-interacting factor 1 
 sly-u.5   101253549   GRF1-interacting factor 1 
 sly-u.5   101246804   GRF1-interacting factor 2-like 
 sly-u.5   101267451   GRF1-interacting factor 3 
 osa-u.5   4334010   GRF1-interacting factor 1 
 osa-u.5   4350919   GRF1-interacting factor 2 
 osa-u.5   4352256   GRF1-interacting factor 3 
 zma-u.5   100101544   growth-regulating-factor-inteacting factor1 
 zma-u.5   100282896   SSXT protein 
 zma-u.5   100101546   uncharacterized LOC100101546 

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Top 50 coexpressed genes to 7464311 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7464311 (ppo-u.5 coexpression data)

CoexMap"7464311"


ppoLOC7464311 | Entrez gene ID : 7464311    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 2 2 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (159 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (49 genes)  IEA  
Protein XP_002317811.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  extr 1,  E.R. 1,  mito_plas 1  (predict for XP_002317811.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002317811.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7464311

.
ppo-r.4
for
7464311

.
ppo-m.4
for
7464311

.
ppo-u.5
for
7487734

.
ppo-u.5
for
7487688

.
ppo-u.5
for
18108068

.
gma-u.5
for
100812917

.
gma-u.5
for
100809843

.
mtr-u.5
for
25499695

.
mtr-u.5
for
25500636

.
ath-u.5
for
GIF3

.
ath-u.5
for
AN3

.
ath-u.5
for
GIF2

.
vvi-u.5
for
100262678

.
vvi-u.5
for
100257141

.
vvi-u.5
for
100253609

.
sly-u.5
for
101253549

.
sly-u.5
for
101246804

.
sly-u.5
for
101267451

.
osa-u.5
for
4334010

.
osa-u.5
for
4350919

.
osa-u.5
for
4352256

.
zma-u.5
for
100101544

.
zma-u.5
for
100282896

.
zma-u.5
for
100101546

.


Ortholog ID: 997
Species ath ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol GIF3 GIF2 LOC100794665 LOC101251372 LOC101246804 LOC4352256 LOC4334010 LOC100282896 LOC100101544 LOC103844629 LOC103874584 LOC100262678 LOC100257141 LOC7486798 LOC7464311 LOC25499695 LOC11409518 LOC123119911 LOC123102766 LOC123448413 LOC123447684 LOC107950356 LOC107895071 LOC111211538 LOC106367766 CHLRE_01g055200v5 LOC8059943 LOC8064085 LOC102597163 LOC102593346 LOC102625389 LOC102616744 LOC100843824 LOC100835669 LOC107813143 LOC107796505
Function* GRF1-interacting factor 3 GRF1-interacting factor 2 GRF1-interacting factor 3 GRF1-interacting factor 1-like GRF1-interacting factor 2-like GRF1-interacting factor 3 GRF1-interacting factor 1 SSXT protein growth-regulating-factor-inteacting factor1 GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 2 GRF1-interacting factor 3 GRF1-interacting factor 3 GRF1-interacting factor 1 GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 3 GRF1-interacting factor 2-like GRF-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 1 GRF1-interacting factor 1-like GRF1-interacting factor 1-like uncharacterized protein GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 3-like GRF1-interacting factor 1-like GRF1-interacting factor 1 GRF1-interacting factor 3 GRF1-interacting factor 1 GRF1-interacting factor 2 GRF1-interacting factor 1-like GRF1-interacting factor 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma03030 DNA replication 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04144 Endocytosis 2
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00061 Fatty acid biosynthesis 5
ppo01212 Fatty acid metabolism 5
ppo00780 Biotin metabolism 4
ppo01240 Biosynthesis of cofactors 4
ppo00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 10
ghi00230 Purine metabolism 6
ghi00730 Thiamine metabolism 6
ghi01232 Nucleotide metabolism 6
ghi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi03060 Protein export 3
bdi03040 Spliceosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827995 839278 100794665 101251372 101246804 4352256 4334010 100282896 100101544 103844629 103874584 100262678 100257141 7486798 7464311 25499695 11409518 123119911 123102766 123448413 123447684 107950356 107895071 111211538 106367766 5725728 8059943 8064085 102597163 102593346 102625389 102616744 100843824 100835669 107813143 107796505
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