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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7465064   uncharacterized LOC7465064 
 ppo-r.4   7465064   uncharacterized LOC7465064 
 ppo-m.4   7465064   uncharacterized LOC7465064 
 ppo-u.5   7478729   uncharacterized LOC7478729 
 ppo-u.5   18102087   uncharacterized LOC18102087 
 gma-u.5   100810002   uncharacterized LOC100810002 
 gma-u.5   100817344   uncharacterized LOC100817344 
 gma-u.5   100816491   uncharacterized LOC100816491 
 mtr-u.5   25485354   uncharacterized LOC25485354 
 mtr-u.5   11407762   uncharacterized LOC11407762 
 ath-u.5   AT2G14850   transcriptional regulator of RNA polII, SAGA, subunit 
 ath-u.5   AT4G33890   transcriptional regulator of RNA polII, SAGA, subunit 
 vvi-u.5   100257838   uncharacterized LOC100257838 
 vvi-u.5   100256708   uncharacterized LOC100256708 
 sly-u.5   101245817   uncharacterized LOC101245817 
 osa-u.5   4334203   uncharacterized LOC4334203 
 osa-u.5   4352635   uncharacterized LOC4352635 
 zma-u.5   100383983   transcriptional regulator of RNA polII SAGA subunit 
 zma-u.5   100273788   transcriptional regulator of RNA polII SAGA subunit 
 zma-u.5   103650260   transcriptional regulator of RNA polII SAGA subunit 

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Top 50 coexpressed genes to 7465064 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465064 (ppo-u.5 coexpression data)

CoexMap"7465064"


ppoLOC7465064 | Entrez gene ID : 7465064    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 2 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (481 genes)  IEA  
GO CC
GO:0000124 [list] [network] SAGA complex  (24 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (49 genes)  IEA  
Protein XP_024440288.2 [sequence] [blastp]
XP_024440289.2 [sequence] [blastp]
XP_024440293.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  mito 1,  cysk 1  (predict for XP_024440288.2)
nucl 8,  cyto 1,  mito 1,  cysk 1  (predict for XP_024440289.2)
nucl 8,  cyto 1,  mito 1,  cysk 1  (predict for XP_024440293.2)
Subcellular
localization
TargetP
other 9  (predict for XP_024440288.2)
other 9  (predict for XP_024440289.2)
other 9  (predict for XP_024440293.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7465064

.
ppo-r.4
for
7465064

.
ppo-m.4
for
7465064

.
ppo-u.5
for
7478729

.
ppo-u.5
for
18102087

.
gma-u.5
for
100810002

.
gma-u.5
for
100817344

.
gma-u.5
for
100816491

.
mtr-u.5
for
25485354

.
mtr-u.5
for
11407762

.
ath-u.5
for
AT2G14850

.
ath-u.5
for
AT4G33890

.
vvi-u.5
for
100257838

.
vvi-u.5
for
100256708

.
sly-u.5
for
101245817

.
osa-u.5
for
4334203

.
osa-u.5
for
4352635

.
zma-u.5
for
100383983

.
zma-u.5
for
100273788

.
zma-u.5
for
103650260

.


Ortholog ID: 2123
Species ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi bna bna sbi sbi sot sot cit cit bdi nta nta
Symbol AT4G33890 LOC100810002 LOC100816491 LOC101245817 LOC4334203 LOC4352635 LOC100273788 LOC100216774 LOC103862273 LOC100257838 LOC100256708 LOC18102087 LOC7465064 LOC25485354 LOC11407762 LOC123086861 LOC123119630 LOC123452491 LOC123447775 LOC107913271 BNACNNG22340D LOC106441229 LOC8068139 LOC8086197 LOC102590988 LOC102590394 LOC102613591 LOC102610114 LOC100830991 LOC107818066 LOC107771260
Function* transcriptional regulator of RNA polII, SAGA, subunit uncharacterized LOC100810002 uncharacterized LOC100816491 uncharacterized LOC101245817 uncharacterized LOC4334203 uncharacterized LOC4352635 transcriptional regulator of RNA polII SAGA subunit uncharacterized LOC100216774 uncharacterized LOC103862273 uncharacterized LOC100257838 uncharacterized LOC100256708 uncharacterized LOC18102087 uncharacterized LOC7465064 uncharacterized LOC25485354 uncharacterized LOC11407762 uncharacterized LOC123086861 uncharacterized LOC123119630 uncharacterized LOC123452491 uncharacterized LOC123447775 uncharacterized LOC107913271 uncharacterized BNACNNG22340D uncharacterized LOC106441229 uncharacterized LOC8068139 uncharacterized LOC8086197 uncharacterized LOC102590988 uncharacterized LOC102590394 uncharacterized LOC102613591 uncharacterized LOC102610114 uncharacterized LOC100830991 uncharacterized LOC107818066 uncharacterized LOC107771260
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 3
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 2
sbi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829532 100810002 100816491 101245817 4334203 4352635 100273788 100216774 103862273 100257838 100256708 18102087 7465064 25485354 11407762 123086861 123119630 123452491 123447775 107913271 106410504 106441229 8068139 8086197 102590988 102590394 102613591 102610114 100830991 107818066 107771260
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