ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7478729	uncharacterized LOC7478729
ppo-r.4	7478729	uncharacterized LOC7478729
ppo-u.5	7465064	uncharacterized LOC7465064
ppo-u.5	18102087	uncharacterized LOC18102087
gma-u.5	100810002	uncharacterized LOC100810002
gma-u.5	100817344	uncharacterized LOC100817344
gma-u.5	100816491	uncharacterized LOC100816491
mtr-u.5	25485354	uncharacterized LOC25485354
mtr-u.5	11407762	uncharacterized LOC11407762
ath-u.5	AT2G14850	transcriptional regulator of RNA polII, SAGA, subunit
ath-u.5	AT4G33890	transcriptional regulator of RNA polII, SAGA, subunit
vvi-u.5	100257838	uncharacterized LOC100257838
vvi-u.5	100256708	uncharacterized LOC100256708
sly-u.5	101245817	uncharacterized LOC101245817
osa-u.5	4334203	uncharacterized LOC4334203
osa-u.5	4352635	uncharacterized LOC4352635
zma-u.5	100383983	transcriptional regulator of RNA polII SAGA subunit
zma-u.5	100273788	transcriptional regulator of RNA polII SAGA subunit
zma-u.5	103650260	transcriptional regulator of RNA polII SAGA subunit

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(481 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(24 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(49 genes)

IEA

Protein

XP_024464265.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto_nucl 4, cyto 1, cysk 1, chlo 1, pero 1, cysk_plas 1

(predict for XP_024464265.1)

Subcellular
localization
TargetP

other 9

(predict for XP_024464265.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7478729 .	ppo-r.4 for 7478729 .	ppo-u.5 for 7465064 .	ppo-u.5 for 18102087 .	gma-u.5 for 100810002 .	gma-u.5 for 100817344 .	gma-u.5 for 100816491 .	mtr-u.5 for 25485354 .	mtr-u.5 for 11407762 .	ath-u.5 for AT2G14850 .	ath-u.5 for AT4G33890 .	vvi-u.5 for 100257838 .	vvi-u.5 for 100256708 .	sly-u.5 for 101245817 .	osa-u.5 for 4334203 .	osa-u.5 for 4352635 .	zma-u.5 for 100383983 .	zma-u.5 for 100273788 .	zma-u.5 for 103650260 .

Ortholog

Ortholog ID: 2123

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

transcriptional regulator of RNA polII, SAGA, subunit

uncharacterized LOC100810002

uncharacterized LOC100816491

uncharacterized LOC101245817

uncharacterized LOC4334203

uncharacterized LOC4352635

transcriptional regulator of RNA polII SAGA subunit

uncharacterized LOC100216774

uncharacterized LOC103862273

uncharacterized LOC100257838

uncharacterized LOC100256708

uncharacterized LOC18102087

uncharacterized LOC7465064

uncharacterized LOC25485354

uncharacterized LOC11407762

uncharacterized LOC123086861

uncharacterized LOC123119630

uncharacterized LOC123452491

uncharacterized LOC123447775

uncharacterized LOC107913271

uncharacterized BNACNNG22340D

uncharacterized LOC106441229

uncharacterized LOC8068139

uncharacterized LOC8086197

uncharacterized LOC102590988

uncharacterized LOC102590394

uncharacterized LOC102613591

uncharacterized LOC102610114

uncharacterized LOC100830991

uncharacterized LOC107818066

uncharacterized LOC107771260

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	3
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2
sbi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	4
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

829532

100810002

100816491

101245817

4334203

4352635

100273788

100216774

103862273

100257838

100256708

18102087

7465064

25485354

11407762

123086861

123119630

123452491

123447775

107913271

106410504

106441229

8068139

8086197

102590988

102590394

102613591

102610114

100830991

107818066

107771260

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7478729 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7478729 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	4	3	2	2	2	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7478729 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7478729 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**