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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7467973   RNA-binding protein Y14 
 ppo-r.4   7467973   RNA-binding protein Y14 
 ppo-m.4   7467973   RNA-binding protein Y14 
 ppo-u.5   7467378   RNA-binding protein Y14 
 gma-u.5   100778595   RNA-binding protein Y14 
 gma-u.5   100527187   uncharacterized LOC100527187 
 mtr-u.5   11427477   RNA-binding protein Y14A 
 ath-u.5   Y14   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100260882   RNA-binding protein Y14 
 sly-u.5   101248886   RNA-binding protein 8A-like 
 osa-u.5   4337757   RNA-binding protein Y14A-like 
 zma-u.5   100280761   RNA-binding protein 8A 
 zma-u.5   100283928   uncharacterized LOC100283928 

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Top 50 coexpressed genes to 7467973 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7467973 (ppo-u.5 coexpression data)

CoexMap"7467973"


ppoLOC7467973 | Entrez gene ID : 7467973    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03013 [list] [network] Nucleocytoplasmic transport (142 genes)
pop03015 [list] [network] mRNA surveillance pathway (164 genes)
pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0008380 [list] [network] RNA splicing  (245 genes)  IEA  
GO CC
GO:0035145 [list] [network] exon-exon junction complex  (11 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_002299789.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_002299789.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_002299789.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7467973

.
ppo-r.4
for
7467973

.
ppo-m.4
for
7467973

.
ppo-u.5
for
7467378

.
gma-u.5
for
100778595

.
gma-u.5
for
100527187

.
mtr-u.5
for
11427477

.
ath-u.5
for
Y14

.
vvi-u.5
for
100260882

.
sly-u.5
for
101248886

.
osa-u.5
for
4337757

.
zma-u.5
for
100280761

.
zma-u.5
for
100283928

.


Ortholog ID: 4317
Species ath gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol Y14 LOC100527187 LOC101248886 LOC4337757 LOC100283928 LOC100280761 LOC103832839 LOC103871282 LOC100260882 LOC7467378 LOC7467973 LOC11427477 LOC123180367 LOC123111024 LOC123424277 LOC107902789 LOC107939456 LOC106427430 LOC125609516 CHLRE_12g526750v5 LOC8071298 LOC8069545 LOC102577678 LOC102597437 LOC102615670 LOC100846603 LOC100837258 LOC107793685 LOC107830894
Function* RNA-binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC100527187 RNA-binding protein 8A-like RNA-binding protein Y14A-like uncharacterized LOC100283928 RNA-binding protein 8A RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14A RNA-binding protein Y14A RNA-binding protein Y14A RNA-binding protein Y14A RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14 RNA-binding protein Y14-like uncharacterized protein uncharacterized RNA-binding protein C23A1.09 RNA-binding protein 8A uncharacterized LOC102577678 RNA-binding protein 8A-like RNA-binding protein Y14 RNA-binding protein Y14A RNA-binding protein Y14A RNA-binding protein Y14A-like RNA-binding protein Y14A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03015 mRNA surveillance pathway 5
ath03013 Nucleocytoplasmic transport 4
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
osa03013 Nucleocytoplasmic transport 4
osa03015 mRNA surveillance pathway 3
osa03250 Viral life cycle - HIV-1 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma03420 Nucleotide excision repair 3
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
zma03420 Nucleotide excision repair 3
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 3
bra03082 ATP-dependent chromatin remodeling 3
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra03040 Spliceosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 3
vvi03010 Ribosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03013 Nucleocytoplasmic transport 5
ppo03015 mRNA surveillance pathway 4
ppo03040 Spliceosome 4
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04130 SNARE interactions in vesicular transport 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 16
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
sbi04016 MAPK signaling pathway - plant 3
sbi04070 Phosphatidylinositol signaling system 3
sbi04626 Plant-pathogen interaction 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03040 Spliceosome 3
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03010 Ribosome 2
nta03040 Spliceosome 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03050 Proteasome 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841576 100527187 101248886 4337757 100283928 100280761 103832839 103871282 100260882 7467378 7467973 11427477 123180367 123111024 123424277 107902789 107939456 106427430 125609516 5722477 8071298 8069545 102577678 102597437 102615670 100846603 100837258 107793685 107830894
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