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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468567   zinc finger CCCH domain-containing protein 25 
 ppo-r.4   7468567   zinc finger CCCH domain-containing protein 25 
 ppo-m.4   7468567   zinc finger CCCH domain-containing protein 25 
 gma-u.5   100814734   zinc finger CCCH domain-containing protein 25 
 gma-u.5   100792988   RNA recognition motif and zinc finger domain-containing protein 
 mtr-u.5   11406304   zinc finger CCCH domain-containing protein 25 
 ath-u.5   AT3G47120   RNA recognition motif (RRM)-containing protein 
 vvi-u.5   100246760   zinc finger CCCH domain-containing protein 25 
 sly-u.5   101251965   zinc finger CCCH domain-containing protein 25 
 osa-u.5   4334639   zinc finger CCCH domain-containing protein 25-like 
 zma-u.5   100282627   uncharacterized LOC100282627 

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Top 50 coexpressed genes to 7468567 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468567 (ppo-u.5 coexpression data)

CoexMap"7468567"


ppoLOC7468567 | Entrez gene ID : 7468567    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (34 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (56 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (72 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2135 genes)  IEA  
Protein XP_002313385.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_002313385.4)
Subcellular
localization
TargetP
other 8  (predict for XP_002313385.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468567

.
ppo-r.4
for
7468567

.
ppo-m.4
for
7468567

.
gma-u.5
for
100814734

.
gma-u.5
for
100792988

.
mtr-u.5
for
11406304

.
ath-u.5
for
AT3G47120

.
vvi-u.5
for
100246760

.
sly-u.5
for
101251965

.
osa-u.5
for
4334639

.
zma-u.5
for
100282627

.


Ortholog ID: 8040
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G47120 LOC100814734 LOC100792988 LOC101251965 LOC4334639 LOC100282627 LOC103873259 LOC100246760 LOC7468567 LOC11406304 LOC123187752 LOC123051873 LOC123453129 LOC107906614 LOC107959184 LOC106371356 LOC106352726 CHLRE_06g280550v5 LOC8079701 LOC102592972 LOC102615951 LOC100832621 LOC107805859 LOC107770040
Function* RNA recognition motif (RRM)-containing protein zinc finger CCCH domain-containing protein 25 RNA recognition motif and zinc finger domain-containing protein zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25-like uncharacterized LOC100282627 zinc finger CCCH domain-containing protein 42 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 42 zinc finger CCCH domain-containing protein 42-like uncharacterized protein zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 42 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823865 100814734 100792988 101251965 4334639 100282627 103873259 100246760 7468567 11406304 123187752 123051873 123453129 107906614 107959184 106371356 106352726 5720912 8079701 102592972 102615951 100832621 107805859 107770040
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