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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7469379   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 ppo-r.4   7469379   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 ppo-m.4   7469379   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 gma-u.5   100790692   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 gma-u.5   100775770   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 mtr-u.5   11429426   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 ath-u.5   LOH1   RNA-binding CRS1 / YhbY (CRM) domain protein 
 vvi-u.5   100252435   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 sly-u.5   101259346   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 osa-u.5   4336259   uncharacterized CRM domain-containing protein At3g25440, chloroplastic 
 zma-u.5   100193495   RNA-binding CRS1 / YhbY (CRM) domain protein 

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Top 50 coexpressed genes to 7469379 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469379 (ppo-u.5 coexpression data)

CoexMap"7469379"


ppoLOC7469379 | Entrez gene ID : 7469379    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_024440442.2 [sequence] [blastp]
XP_024440443.2 [sequence] [blastp]
XP_024440445.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_024440442.2)
chlo 9,  chlo_mito 5  (predict for XP_024440443.2)
cyto 6,  nucl 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024440445.2)
Subcellular
localization
TargetP
chlo 2  (predict for XP_024440442.2)
scret 1  (predict for XP_024440443.2)
other 8  (predict for XP_024440445.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7469379

.
ppo-r.4
for
7469379

.
ppo-m.4
for
7469379

.
gma-u.5
for
100790692

.
gma-u.5
for
100775770

.
mtr-u.5
for
11429426

.
ath-u.5
for
LOH1

.
vvi-u.5
for
100252435

.
sly-u.5
for
101259346

.
osa-u.5
for
4336259

.
zma-u.5
for
100193495

.


Ortholog ID: 9510
Species ath gma gma sly osa zma bra vvi ppo mtr tae hvu ghi bna bna sbi sot cit bdi nta nta
Symbol LOH1 LOC100775770 LOC100790692 LOC101259346 LOC4336259 LOC100193495 LOC103828555 LOC100252435 LOC7469379 LOC11429426 LOC123189618 LOC123427094 LOC107922770 BNACNNG00400D LOC106366679 LOC8073713 LOC102593888 LOC102620415 LOC100821999 LOC107810846 LOC107768930
Function* RNA-binding CRS1 / YhbY (CRM) domain protein uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic RNA-binding CRS1 / YhbY (CRM) domain protein uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic uncharacterized CRM domain-containing protein At3g25440, chloroplastic putative CRM domain-containing protein At3g25440, chloroplastic putative CRM domain-containing protein At3g25440, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
gma04517 IgSF CAM signaling 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 2
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00310 Lysine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822128 100775770 100790692 101259346 4336259 100193495 103828555 100252435 7469379 11429426 123189618 123427094 107922770 106402900 106366679 8073713 102593888 102620415 100821999 107810846 107768930
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