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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7469666   LL-diaminopimelate aminotransferase, chloroplastic 
 ppo-r.4   7469666   LL-diaminopimelate aminotransferase, chloroplastic 
 ppo-m.4   7469666   LL-diaminopimelate aminotransferase, chloroplastic 
 ppo-u.5   18099211   probable LL-diaminopimelate aminotransferase, chloroplastic 
 gma-u.5   100791895   aminotransferase ALD1, chloroplastic 
 gma-u.5   100801405   LL-diaminopimelate aminotransferase, chloroplastic 
 gma-u.5   100807796   LL-diaminopimelate aminotransferase, chloroplastic 
 mtr-u.5   11416415   LL-diaminopimelate aminotransferase, chloroplastic 
 mtr-u.5   11434331   aminotransferase ALD1, chloroplastic 
 ath-u.5   ALD1   AGD2-like defense response protein 1 
 ath-u.5   AGD2   Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 
 vvi-u.5   100267796   aminotransferase ALD1, chloroplastic 
 sly-u.5   101252192   LL-diaminopimelate aminotransferase, chloroplastic 
 sly-u.5   101252842   aminotransferase ALD1, chloroplastic 
 osa-u.5   4331930   aminotransferase ALD1 homolog 
 osa-u.5   4332563   probable LL-diaminopimelate aminotransferase, chloroplastic 
 zma-u.5   100283445   transaminase/ transferase, transferring nitrogenous groups 
 zma-u.5   103632470   aminotransferase ALD1 homolog 

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Top 50 coexpressed genes to 7469666 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469666 (ppo-u.5 coexpression data)

CoexMap"7469666"


ppoLOC7469666 | Entrez gene ID : 7469666    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 3 2 2 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00300 [list] [network] Lysine biosynthesis (18 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (13 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0010285 [list] [network] L,L-diaminopimelate aminotransferase activity  (1 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (105 genes)  IEA  
Protein XP_002313204.4 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002313204.4)
Subcellular
localization
TargetP
chlo 6  (predict for XP_002313204.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7469666

.
ppo-r.4
for
7469666

.
ppo-m.4
for
7469666

.
ppo-u.5
for
18099211

.
gma-u.5
for
100791895

.
gma-u.5
for
100801405

.
gma-u.5
for
100807796

.
mtr-u.5
for
11416415

.
mtr-u.5
for
11434331

.
ath-u.5
for
ALD1

.
ath-u.5
for
AGD2

.
vvi-u.5
for
100267796

.
sly-u.5
for
101252192

.
sly-u.5
for
101252842

.
osa-u.5
for
4331930

.
osa-u.5
for
4332563

.
zma-u.5
for
100283445

.
zma-u.5
for
103632470

.


Ortholog ID: 2374
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AGD2 ALD1 LOC100791895 LOC100807796 LOC101252192 LOC101252842 LOC4332563 LOC4331930 LOC100283445 LOC103632470 LOC103834462 LOC103861095 LOC100267796 LOC18099211 LOC7469666 LOC11434331 LOC11416415 LOC123154437 LOC123098411 LOC123448864 LOC107938864 LOC106361092 LOC106365194 CHLRE_17g734200v5 LOC8084016 LOC8081893 LOC102580299 LOC102597847 LOC102623766 LOC100834072 LOC100827448 LOC107784853 LOC107811239
Function* Pyridoxal phosphate (PLP)-dependent transferases superfamily protein AGD2-like defense response protein 1 aminotransferase ALD1, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1, chloroplastic probable LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1 homolog transaminase/ transferase, transferring nitrogenous groups aminotransferase ALD1 homolog LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1, chloroplastic aminotransferase ALD1, chloroplastic probable LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic probable LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1 homolog probable LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic uncharacterized protein probable LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1 homolog aminotransferase ALD1 LL-diaminopimelate aminotransferase, chloroplastic LL-diaminopimelate aminotransferase, chloroplastic probable LL-diaminopimelate aminotransferase, chloroplastic probable LL-diaminopimelate aminotransferase, chloroplastic aminotransferase ALD1, chloroplastic-like LL-diaminopimelate aminotransferase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath01210 2-Oxocarboxylic acid metabolism 5
ath00220 Arginine biosynthesis 4
ath00300 Lysine biosynthesis 4
ath01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 9
gma01200 Carbon metabolism 7
gma01240 Biosynthesis of cofactors 4
gma00220 Arginine biosynthesis 4
gma00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 6
sly01210 2-Oxocarboxylic acid metabolism 5
sly01240 Biosynthesis of cofactors 3
sly00290 Valine, leucine and isoleucine biosynthesis 3
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 8
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
osa00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 4
zma03010 Ribosome 4
zma01230 Biosynthesis of amino acids 3
zma00300 Lysine biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra01210 2-Oxocarboxylic acid metabolism 3
bra00220 Arginine biosynthesis 2
bra00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00460 Cyanoamino acid metabolism 2
bra00500 Starch and sucrose metabolism 2
bra00999 Biosynthesis of various plant secondary metabolites 2
bra00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 3
ppo00020 Citrate cycle (TCA cycle) 2
ppo00566 Sulfoquinovose metabolism 2
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00300 Lysine biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu01230 Biosynthesis of amino acids 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi01230 Biosynthesis of amino acids 5
ghi00230 Purine metabolism 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi01232 Nucleotide metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00740 Riboflavin metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 11
bna00300 Lysine biosynthesis 7
bna00220 Arginine biosynthesis 4
bna00740 Riboflavin metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre01210 2-Oxocarboxylic acid metabolism 3
cre03013 Nucleocytoplasmic transport 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi01230 Biosynthesis of amino acids 5
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi00300 Lysine biosynthesis 4
sbi00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00564 Glycerophospholipid metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 4
sot04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 6
sot00300 Lysine biosynthesis 4
sot01240 Biosynthesis of cofactors 4
sot00061 Fatty acid biosynthesis 3
sot01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00230 Purine metabolism 3
cit03008 Ribosome biogenesis in eukaryotes 3
cit01232 Nucleotide metabolism 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 8
bdi03010 Ribosome 4
bdi00250 Alanine, aspartate and glutamate metabolism 3
bdi00300 Lysine biosynthesis 3
bdi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 8
bdi03010 Ribosome 7
bdi00250 Alanine, aspartate and glutamate metabolism 3
bdi00300 Lysine biosynthesis 3
bdi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 9
nta03082 ATP-dependent chromatin remodeling 3
nta04146 Peroxisome 2
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829510 815864 100791895 100807796 101252192 101252842 4332563 4331930 100283445 103632470 103834462 103861095 100267796 18099211 7469666 11434331 11416415 123154437 123098411 123448864 107938864 106361092 106365194 5718617 8084016 8081893 102580299 102597847 102623766 100834072 100827448 107784853 107811239
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