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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7474232   cullin-3A 
 ppo-r.4   7474232   cullin-3A 
 ppo-u.5   7471494   cullin-3A 
 gma-u.5   100782239   cullin-3A 
 gma-u.5   100795098   cullin-3A 
 mtr-u.5   25495296   cullin-3A 
 mtr-u.5   120580095   cullin-3A 
 mtr-u.5   25498104   cullin-3A 
 ath-u.5   CUL3   cullin 3 
 ath-u.5   CUL3B   cullin 3B 
 vvi-u.5   100254227   cullin-3B-like 
 vvi-u.5   100265464   cullin-3A 
 sly-u.5   101254652   cullin-3A-like 
 sly-u.5   101248999   cullin-3A 
 osa-u.5   4330720   cullin-3A 
 osa-u.5   4337175   cullin-3B 
 zma-u.5   100384196   Cullin-3B 
 zma-u.5   103627724   cullin-3A 
 zma-u.5   103641219   cullin-3A 

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Top 50 coexpressed genes to 7474232 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7474232 (ppo-u.5 coexpression data)

CoexMap"7474232"


ppoLOC7474232 | Entrez gene ID : 7474232    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 3 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (340 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO CC
GO:0031461 [list] [network] cullin-RING ubiquitin ligase complex  (129 genes)  IEA  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (47 genes)  IEA  
Protein XP_002315795.2 [sequence] [blastp]
XP_024466195.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  nucl 1  (predict for XP_002315795.2)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_024466195.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_002315795.2)
other 6  (predict for XP_024466195.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7474232

.
ppo-r.4
for
7474232

.
ppo-u.5
for
7471494

.
gma-u.5
for
100782239

.
gma-u.5
for
100795098

.
mtr-u.5
for
25495296

.
mtr-u.5
for
120580095

.
mtr-u.5
for
25498104

.
ath-u.5
for
CUL3

.
ath-u.5
for
CUL3B

.
vvi-u.5
for
100254227

.
vvi-u.5
for
100265464

.
sly-u.5
for
101254652

.
sly-u.5
for
101248999

.
osa-u.5
for
4330720

.
osa-u.5
for
4337175

.
zma-u.5
for
100384196

.
zma-u.5
for
103627724

.
zma-u.5
for
103641219

.


Ortholog ID: 2249
Species ath ath gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CUL3B CUL3 LOC100794520 LOC101248999 LOC101254652 LOC4337175 LOC103641219 LOC100384196 LOC103840654 LOC103835615 LOC100254227 LOC100265464 LOC7474232 LOC7471494 LOC25495296 LOC25495298 LOC123145491 LOC123190820 LOC123428190 LOC123406208 LOC107904068 LOC107898717 LOC111199820 LOC125578669 CHLRE_07g324050v5 LOC8066432 LOC8080881 LOC102605397 LOC102586525 LOC102622384 LOC102630361 LOC100834318 LOC100823589 LOC107814473 LOC107768960
Function* cullin 3B cullin 3 cullin-3A cullin-3A cullin-3A-like cullin-3B cullin-3A Cullin-3B cullin-3A cullin-3A cullin-3B-like cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A cullin-3A-like cullin-3A-like cullin-3B cullin-3A cullin-3A-like cullin-3A uncharacterized protein cullin-3A cullin-3A cullin-3A cullin-3A-like cullin-3A cullin-3B-like cullin-3A cullin-3A cullin-3A-like cullin-3A-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04141 Protein processing in endoplasmic reticulum 2
sly03018 RNA degradation 2
sly03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04075 Plant hormone signal transduction 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 4
tae04120 Ubiquitin mediated proteolysis 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 3
sbi03018 RNA degradation 2
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 4
nta03022 Basal transcription factors 4
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03022 Basal transcription factors 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 3
nta02010 ABC transporters 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843303 839226 100794520 101248999 101254652 4337175 103641219 100384196 103840654 103835615 100254227 100265464 7474232 7471494 25495296 25495298 123145491 123190820 123428190 123406208 107904068 107898717 111199820 125578669 5726613 8066432 8080881 102605397 102586525 102622384 102630361 100834318 100823589 107814473 107768960
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