ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	25498104	cullin-3A
mtr-r.5	25498104	cullin-3A
mtr-u.5	25495298	cullin-3A
mtr-u.5	120580095	cullin-3A
mtr-u.5	11410449	cullin-3A
gma-u.5	100794520	cullin-3A
gma-u.5	100795098	cullin-3A
ppo-u.5	7474232	cullin-3A
ppo-u.5	7471494	cullin-3A
ath-u.5	CUL3	cullin 3
ath-u.5	CUL3B	cullin 3B
vvi-u.5	100254227	cullin-3B-like
vvi-u.5	100265464	cullin-3A
sly-u.5	101254652	cullin-3A-like
sly-u.5	101248999	cullin-3A
osa-u.5	4330720	cullin-3A
osa-u.5	4337175	cullin-3B
zma-u.5	103627724	cullin-3A
zma-u.5	103641219	cullin-3A
zma-u.5	100384196	Cullin-3B

Annotation

functional annotation

KEGG

mtr04120 [list] [network] Ubiquitin mediated proteolysis (187 genes)

GO BP

GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process

(368 genes)

IEA

GO CC

GO MF

GO:0031625 [list] [network] ubiquitin protein ligase binding

(32 genes)

IEA

Protein

XP_013448308.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 2, mito 1, cyto_mito 1

(predict for XP_013448308.1)

Subcellular
localization
TargetP

other 7, mito 3

(predict for XP_013448308.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25498104	mtr-r.5 for 25498104	mtr-u.5 for 25495298	mtr-u.5 for 120580095	mtr-u.5 for 11410449	gma-u.5 for 100794520	gma-u.5 for 100795098	ppo-u.5 for 7474232	ppo-u.5 for 7471494	ath-u.5 for CUL3	ath-u.5 for CUL3B	vvi-u.5 for 100254227	vvi-u.5 for 100265464	sly-u.5 for 101254652	sly-u.5 for 101248999	osa-u.5 for 4330720	osa-u.5 for 4337175	zma-u.5 for 103627724	zma-u.5 for 103641219	zma-u.5 for 100384196

Ortholog

Ortholog ID: 2249

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CUL3B

CUL3

Function^*

cullin-3A

cullin 3B

cullin 3

cullin-3A

cullin-3B-like

cullin-3A

cullin-3B

cullin-3A

cullin-3A-like

cullin-3A

cullin-3B-like

cullin-3A

cullin-3A-like

cullin-3A

cullin-3A-like

cullin-3B

cullin-3A

Cullin-3B

cullin-3A

cullin-3A-like

cullin-3A

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2
mtr03082	ATP-dependent chromatin remodeling	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04075	Plant hormone signal transduction	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	4
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly04141	Protein processing in endoplasmic reticulum	2
sly03018	RNA degradation	2
sly03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6
nta04141	Protein processing in endoplasmic reticulum	4
nta03022	Basal transcription factors	4
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6
nta03022	Basal transcription factors	5
nta04141	Protein processing in endoplasmic reticulum	4
nta03420	Nucleotide excision repair	3
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	4
tae04120	Ubiquitin mediated proteolysis	3
tae03060	Protein export	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	3
sbi03040	Spliceosome	3
sbi03018	RNA degradation	2
sbi00860	Porphyrin metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi04120	Ubiquitin mediated proteolysis	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

25495296

25495298

100794520

7474232

7471494

843303

839226

103840654

103835615

100254227

100265464

107904068

107898717

111199820

125578669

102622384

102630361

101248999

101254652

102605397

102586525

107814473

107768960

4337175

103641219

100384196

123145491

123190820

123428190

123406208

8066432

8080881

100834318

100823589

5726613

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 25498104 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25498104 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	2	2	2	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25498104 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25498104 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**