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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477117   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 ppo-r.4   7477117   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 ppo-m.4   7477117   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 gma-u.5   100808981   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 gma-u.5   100795589   pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic 
 mtr-u.5   11427444   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 ath-u.5   EMB2453   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100249090   pentatricopeptide repeat-containing protein At4g39620, chloroplastic 
 sly-u.5   101262511   pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic 
 osa-u.5   4330740   pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 
 zma-u.5   100126361   pentatricopeptide repeat 5 

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Top 50 coexpressed genes to 7477117 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477117 (ppo-u.5 coexpression data)

CoexMap"7477117"


ppoLOC7477117 | Entrez gene ID : 7477117    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002306340.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  pero 1  (predict for XP_002306340.3)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002306340.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477117

.
ppo-r.4
for
7477117

.
ppo-m.4
for
7477117

.
gma-u.5
for
100808981

.
gma-u.5
for
100795589

.
mtr-u.5
for
11427444

.
ath-u.5
for
EMB2453

.
vvi-u.5
for
100249090

.
sly-u.5
for
101262511

.
osa-u.5
for
4330740

.
zma-u.5
for
100126361

.


Ortholog ID: 10913
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol EMB2453 LOC100808981 LOC100795589 LOC101262511 LOC4330740 LOC100126361 LOC103850678 LOC100249090 LOC7477117 LOC11427444 LOC123128355 LOC123138207 LOC123403739 LOC121222446 LOC107914377 LOC106358406 LOC106439122 LOC8075700 LOC102582767 LOC102621702 LOC100827990 LOC107769356 LOC107767475
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like pentatricopeptide repeat 5 pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae00220 Arginine biosynthesis 3
tae00330 Arginine and proline metabolism 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830116 100808981 100795589 101262511 4330740 100126361 103850678 100249090 7477117 11427444 123128355 123138207 123403739 121222446 107914377 106358406 106439122 8075700 102582767 102621702 100827990 107769356 107767475
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