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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478007   geranylgeranyl pyrophosphate synthase, chloroplastic 
 ppo-r.4   7478007   geranylgeranyl pyrophosphate synthase, chloroplastic 
 gma-u.5   100782362   geranylgeranyl pyrophosphate synthase, chloroplastic 
 gma-u.5   100785539   geranylgeranyl pyrophosphate synthase, chloroplastic 
 mtr-u.5   11406646   geranylgeranyl pyrophosphate synthase, chloroplastic 
 mtr-u.5   11407094   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 ath-u.5   GGPS6   geranylgeranyl pyrophosphate synthase 6 
 vvi-u.5   100257359   geranylgeranyl pyrophosphate synthase, chloroplastic 
 vvi-u.5   100259617   heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic 
 vvi-u.5   100266842   geranylgeranyl pyrophosphate synthase, chloroplastic 
 sly-u.5   GGPS2   geranylgeranyl pyrophosphate synthase 2 
 sly-u.5   GGPS1   geranylgeranyl pyrophosphate synthase 1 
 sly-u.5   100037490   geranylgeranyl pyrophosphate synthetase-like protein 
 osa-u.5   4343721   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 osa-u.5   9272383   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 zma-u.5   100502545   uncharacterized LOC100502545 
 zma-u.5   100502524   putative geranylgeranyl pyrophosphate synthase 3 
 zma-u.5   100502523   putative geranylgeranyl pyrophosphate synthase 1 

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Top 50 coexpressed genes to 7478007 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478007 (ppo-u.5 coexpression data)

CoexMap"7478007"


ppoLOC7478007 | Entrez gene ID : 7478007    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 2 1 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (136 genes)  IEA  
GO CC
GO MF
GO:0004311 [list] [network] geranylgeranyl diphosphate synthase activity  (8 genes)  IEA  
Protein XP_002310785.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002310785.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002310785.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478007

.
ppo-r.4
for
7478007

.
gma-u.5
for
100782362

.
gma-u.5
for
100785539

.
mtr-u.5
for
11406646

.
mtr-u.5
for
11407094

.
ath-u.5
for
GGPS6

.
vvi-u.5
for
100257359

.
vvi-u.5
for
100259617

.
vvi-u.5
for
100266842

.
sly-u.5
for
GGPS2

.
sly-u.5
for
GGPS1

.
sly-u.5
for
100037490

.
osa-u.5
for
4343721

.
osa-u.5
for
9272383

.
zma-u.5
for
100502545

.
zma-u.5
for
100502524

.
zma-u.5
for
100502523

.


Ortholog ID: 1096
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo mtr mtr tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT3G20160 LOC100782362 LOC100778289 GGPS1 LOC100037490 LOC9272383 LOC4343721 LOC100502545 LOC100502523 LOC103865611 LOC100259617 LOC100257359 LOC18099318 LOC11406646 LOC11407094 LOC123052295 LOC123429802 LOC123404206 LOC121222400 LOC121222401 LOC106384672 CHLRE_12g484200v5 LOC8085070 LOC8058355 LOC102589012 LOC102587251 LOC102628942 LOC100841309 LOC100830402 LOC107799556 LOC107774226
Function* Terpenoid synthases superfamily protein geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 1 geranylgeranyl pyrophosphate synthetase-like protein geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic uncharacterized LOC100502545 putative geranylgeranyl pyrophosphate synthase 1 geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase 7, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic uncharacterized protein geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase 7, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 3
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00900 Terpenoid backbone biosynthesis 2
gma00030 Pentose phosphate pathway 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03018 RNA degradation 3
gma01240 Biosynthesis of cofactors 3
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sly04141 Protein processing in endoplasmic reticulum 3
sly01200 Carbon metabolism 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 8
osa00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
zma00860 Porphyrin metabolism 3
zma01240 Biosynthesis of cofactors 3
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 5
zma00860 Porphyrin metabolism 4
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
vvi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00710 Carbon fixation by Calvin cycle 3
ppo01230 Biosynthesis of amino acids 3
ppo03010 Ribosome 2
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr03010 Ribosome 3
mtr01230 Biosynthesis of amino acids 3
mtr01240 Biosynthesis of cofactors 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 8
mtr00900 Terpenoid backbone biosynthesis 4
mtr00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
hvu00900 Terpenoid backbone biosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 4
hvu04712 Circadian rhythm - plant 4
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 10
cre01240 Biosynthesis of cofactors 6
cre00900 Terpenoid backbone biosynthesis 2
cre00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00960 Tropane, piperidine and pyridine alkaloid biosynthesis 4
cit00909 Sesquiterpenoid and triterpenoid biosynthesis 3
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821560 100782362 100778289 778310 100037490 9272383 4343721 100502545 100502523 103865611 100259617 100257359 18099318 11406646 11407094 123052295 123429802 123404206 121222400 121222401 106384672 5728730 8085070 8058355 102589012 102587251 102628942 100841309 100830402 107799556 107774226
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