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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478289   RNA polymerase II C-terminal domain phosphatase-like 3 
 ppo-r.4   7478289   RNA polymerase II C-terminal domain phosphatase-like 3 
 ppo-u.5   7460580   RNA polymerase II C-terminal domain phosphatase-like 3 
 gma-u.5   100798750   RNA polymerase II C-terminal domain phosphatase-like 3 
 gma-u.5   100790196   RNA polymerase II C-terminal domain phosphatase-like 3 
 mtr-u.5   11443825   RNA polymerase II C-terminal domain phosphatase-like 3 
 mtr-u.5   11405345   RNA polymerase II C-terminal domain phosphatase-like 3 
 ath-u.5   CPL3   C-terminal domain phosphatase-like 3 
 vvi-u.5   100243734   RNA polymerase II C-terminal domain phosphatase-like 3 
 sly-u.5   101266201   RNA polymerase II C-terminal domain phosphatase-like 3 
 osa-u.5   4350606   RNA polymerase II C-terminal domain phosphatase-like 3 
 zma-u.5   103652948   RNA polymerase II C-terminal domain phosphatase-like 3 

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Top 50 coexpressed genes to 7478289 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478289 (ppo-u.5 coexpression data)

CoexMap"7478289"


ppoLOC7478289 | Entrez gene ID : 7478289    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (8 genes)  IEA  
Protein XP_002304714.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_002304714.3)
Subcellular
localization
TargetP
other 9  (predict for XP_002304714.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478289

.
ppo-r.4
for
7478289

.
ppo-u.5
for
7460580

.
gma-u.5
for
100798750

.
gma-u.5
for
100790196

.
mtr-u.5
for
11443825

.
mtr-u.5
for
11405345

.
ath-u.5
for
CPL3

.
vvi-u.5
for
100243734

.
sly-u.5
for
101266201

.
osa-u.5
for
4350606

.
zma-u.5
for
103652948

.


Ortholog ID: 9414
Species ath gma gma sly osa zma vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CPL3 LOC100798750 LOC100790196 LOC101266201 LOC4350606 LOC103652948 LOC100243734 LOC7478289 LOC7460580 LOC11405345 LOC11443825 LOC123085898 LOC123092085 LOC123448580 LOC107898990 LOC121228199 LOC106347185 LOC106451167 LOC8083123 LOC102604136 LOC102628448 LOC100836693 LOC107814812 LOC107812060
Function* C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly03250 Viral life cycle - HIV-1 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu03083 Polycomb repressive complex 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817919 100798750 100790196 101266201 4350606 103652948 100243734 7478289 7460580 11405345 11443825 123085898 123092085 123448580 107898990 121228199 106347185 106451167 8083123 102604136 102628448 100836693 107814812 107812060
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