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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CPL3   C-terminal domain phosphatase-like 3 
 ath-r.7   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.9   CPL3   C-terminal domain phosphatase-like 3 
 ath-e.2   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.4.bio   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.4.hor   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.4.lig   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.4.str   CPL3   C-terminal domain phosphatase-like 3 
 ath-m.4.tis   CPL3   C-terminal domain phosphatase-like 3 
 bna-r.1   106451167   RNA polymerase II C-terminal domain phosphatase-like 3 
 bna-r.1   106347185   RNA polymerase II C-terminal domain phosphatase-like 3 
 ghi-r.1   121228199   RNA polymerase II C-terminal domain phosphatase-like 3 
 ghi-r.1   107898990   RNA polymerase II C-terminal domain phosphatase-like 3 
 cit-r.1   102628448   RNA polymerase II C-terminal domain phosphatase-like 3 
 gma-u.5   100790196   RNA polymerase II C-terminal domain phosphatase-like 3 
 gma-u.5   100798750   RNA polymerase II C-terminal domain phosphatase-like 3 
 vvi-u.5   100243734   RNA polymerase II C-terminal domain phosphatase-like 3 
 ppo-u.5   7460580   RNA polymerase II C-terminal domain phosphatase-like 3 
 ppo-u.5   7478289   RNA polymerase II C-terminal domain phosphatase-like 3 
 mtr-u.5   11405345   RNA polymerase II C-terminal domain phosphatase-like 3 
 mtr-u.5   11443825   RNA polymerase II C-terminal domain phosphatase-like 3 
 sly-u.5   101266201   RNA polymerase II C-terminal domain phosphatase-like 3 
 sot-r.1   102604136   RNA polymerase II C-terminal domain phosphatase-like 3 
 nta-r.1   107812060   RNA polymerase II C-terminal domain phosphatase-like 3 
 nta-r.1   107814812   RNA polymerase II C-terminal domain phosphatase-like 3 
 osa-u.5   4350606   RNA polymerase II C-terminal domain phosphatase-like 3 
 zma-u.5   103652948   RNA polymerase II C-terminal domain phosphatase-like 3 
 tae-r.2   123097272   RNA polymerase II C-terminal domain phosphatase-like 3 
 tae-r.2   123085898   RNA polymerase II C-terminal domain phosphatase-like 3 
 tae-r.2   123092085   RNA polymerase II C-terminal domain phosphatase-like 3 
 hvu-r.1   123448580   RNA polymerase II C-terminal domain phosphatase-like 3 
 sbi-r.1   8083123   RNA polymerase II C-terminal domain phosphatase-like 3 
 bdi-r.1   100836693   RNA polymerase II C-terminal domain phosphatase-like 3 

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Top 50 coexpressed genes to CPL3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CPL3 (ath-u.5 coexpression data)

CoexMap""


athCPL3 | Entrez gene ID : 817919      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 2 1 2 1 2 2 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function C-terminal domain phosphatase-like 3
KEGG
GO BP
GO:1900369 [list] [network] negative regulation of post-transcriptional gene silencing by regulatory ncRNA  (4 genes)  IGI  
GO:0006470 [list] [network] protein dephosphorylation  (41 genes)  IDA  
GO:0009788 [list] [network] negative regulation of abscisic acid-activated signaling pathway  (62 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IGI  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001325202.1 [sequence] [blastp]
NP_180912.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3  (predict for NP_001325202.1)
chlo 4,  nucl 4,  mito 2,  cysk_nucl 2  (predict for NP_180912.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001325202.1)
other 6,  mito 5  (predict for NP_180912.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CPL3
ath-r.7
for
CPL3
ath-m.9
for
CPL3
ath-e.2
for
CPL3
ath-m.4.bio
for
CPL3
ath-m.4.hor
for
CPL3
ath-m.4.lig
for
CPL3
ath-m.4.str
for
CPL3
ath-m.4.tis
for
CPL3
bna-r.1
for
106451167
bna-r.1
for
106347185
ghi-r.1
for
121228199
ghi-r.1
for
107898990
cit-r.1
for
102628448
gma-u.5
for
100790196
gma-u.5
for
100798750
vvi-u.5
for
100243734
ppo-u.5
for
7460580
ppo-u.5
for
7478289
mtr-u.5
for
11405345
mtr-u.5
for
11443825
sly-u.5
for
101266201
sot-r.1
for
102604136
nta-r.1
for
107812060
nta-r.1
for
107814812
osa-u.5
for
4350606
zma-u.5
for
103652948
tae-r.2
for
123097272
tae-r.2
for
123085898
tae-r.2
for
123092085
hvu-r.1
for
123448580
sbi-r.1
for
8083123
bdi-r.1
for
100836693

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Ortholog ID: 9414
Species ath bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol CPL3 LOC106451167 LOC106347185 LOC121228199 LOC107898990 LOC102628448 LOC100790196 LOC100798750 LOC100243734 LOC7460580 LOC7478289 LOC11405345 LOC11443825 LOC101266201 LOC102604136 LOC107812060 LOC107814812 LOC4350606 LOC103652948 LOC123097272 LOC123085898 LOC123092085 LOC123448580 LOC8083123 LOC100836693
Function* C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3 RNA polymerase II C-terminal domain phosphatase-like 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly03250 Viral life cycle - HIV-1 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 2
hvu03083 Polycomb repressive complex 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817919 106451167 106347185 121228199 107898990 102628448 100790196 100798750 100243734 7460580 7478289 11405345 11443825 101266201 102604136 107812060 107814812 4350606 103652948 123097272 123085898 123092085 123448580 8083123 100836693
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