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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7479248   hydroxymethylglutaryl-CoA synthase 
 ppo-r.4   7479248   hydroxymethylglutaryl-CoA synthase 
 ppo-m.4   7479248   hydroxymethylglutaryl-CoA synthase 
 ppo-u.5   7478083   hydroxymethylglutaryl-CoA synthase 
 gma-u.5   100777679   hydroxymethylglutaryl-CoA synthase-like protein 
 gma-u.5   100780554   hydroxymethylglutaryl-CoA synthase 
 gma-u.5   100782595   putative hydroxymethylglutaryl-CoA synthase 
 mtr-u.5   11438999   hydroxymethylglutaryl-CoA synthase 
 mtr-u.5   11429131   hydroxymethylglutaryl-CoA synthase 
 ath-u.5   HMGS   hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase 
 vvi-u.5   100257525   hydroxymethylglutaryl-CoA synthase 
 vvi-u.5   100244379   hydroxymethylglutaryl-CoA synthase 
 sly-u.5   HMGS1   hydroxymethylglutaryl-CoA synthase 1 
 sly-u.5   HMGS4   hydroxymethylglutaryl-CoA synthase 4 
 sly-u.5   HMGS2   3-hydroxy-3-methylglutaryl coenzyme A synthase 
 osa-u.5   4347614   hydroxymethylglutaryl-CoA synthase 
 osa-u.5   4346215   hydroxymethylglutaryl-CoA synthase 
 osa-u.5   4331418   hydroxymethylglutaryl-CoA synthase 
 zma-u.5   103647599   hydroxymethylglutaryl-CoA synthase 
 zma-u.5   100384769   putative hydroxymethylglutaryl-CoA synthase family protein 
 zma-u.5   100272824   Hydroxymethylglutaryl-CoA synthase 

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Top 50 coexpressed genes to 7479248 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7479248 (ppo-u.5 coexpression data)

CoexMap"7479248"


ppoLOC7479248 | Entrez gene ID : 7479248    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 3 2 1 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00280 [list] [network] Valine, leucine and isoleucine degradation (65 genes)
pop00650 [list] [network] Butanoate metabolism (27 genes)
pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0010142 [list] [network] farnesyl diphosphate biosynthetic process, mevalonate pathway  (4 genes)  IEA  
GO:0006084 [list] [network] acetyl-CoA metabolic process  (26 genes)  IEA  
GO CC
GO MF
GO:0004421 [list] [network] hydroxymethylglutaryl-CoA synthase activity  (2 genes)  IEA  
Protein XP_002304458.4 [sequence] [blastp]
XP_052307714.1 [sequence] [blastp]
XP_052307715.1 [sequence] [blastp]
XP_052307716.1 [sequence] [blastp]
XP_052307717.1 [sequence] [blastp]
XP_052307718.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 4,  nucl 1  (predict for XP_002304458.4)
chlo 5,  extr 3,  cyto 1  (predict for XP_052307714.1)
chlo 5,  extr 3,  cyto 1  (predict for XP_052307715.1)
chlo 5,  extr 3,  cyto 1  (predict for XP_052307716.1)
chlo 6,  extr 4  (predict for XP_052307717.1)
chlo 5,  extr 4  (predict for XP_052307718.1)
Subcellular
localization
TargetP
other 5,  scret 5  (predict for XP_002304458.4)
scret 6,  other 5  (predict for XP_052307714.1)
scret 6,  other 5  (predict for XP_052307715.1)
other 5,  scret 5  (predict for XP_052307716.1)
other 5,  scret 5  (predict for XP_052307717.1)
other 5,  scret 5  (predict for XP_052307718.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7479248

.
ppo-r.4
for
7479248

.
ppo-m.4
for
7479248

.
ppo-u.5
for
7478083

.
gma-u.5
for
100777679

.
gma-u.5
for
100780554

.
gma-u.5
for
100782595

.
mtr-u.5
for
11438999

.
mtr-u.5
for
11429131

.
ath-u.5
for
HMGS

.
vvi-u.5
for
100257525

.
vvi-u.5
for
100244379

.
sly-u.5
for
HMGS1

.
sly-u.5
for
HMGS4

.
sly-u.5
for
HMGS2

.
osa-u.5
for
4347614

.
osa-u.5
for
4346215

.
osa-u.5
for
4331418

.
zma-u.5
for
103647599

.
zma-u.5
for
100384769

.
zma-u.5
for
100272824

.


Ortholog ID: 2351
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol HMGS LOC100782595 LOC100794889 HMGS4 HMGS1 LOC4346215 LOC4331418 LOC100384769 LOC100285783 LOC103828819 LOC103853500 LOC100244379 LOC7478083 LOC7479248 LOC11429131 LOC11438999 LOC123093812 LOC123165539 LOC123449907 LOC123407244 LOC107963679 LOC107929989 LOC106418704 LOC106380573 CHLRE_16g678850v5 LOC8057865 LOC110433071 LOC102601874 LOC102584775 LOC102610839 LOC102629096 LOC100833811 LOC100846544 LOC107798568 LOC107816507
Function* hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase putative hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase 4 hydroxymethylglutaryl-CoA synthase 1 hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase putative hydroxymethylglutaryl-CoA synthase family protein hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase uncharacterized LOC123093812 hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase-like hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase uncharacterized protein hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase-like hydroxymethylglutaryl-CoA synthase-like hydroxymethylglutaryl-CoA synthase-like hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase hydroxymethylglutaryl-CoA synthase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00010 Glycolysis / Gluconeogenesis 8
ath01200 Carbon metabolism 8
ath00620 Pyruvate metabolism 6
ath00900 Terpenoid backbone biosynthesis 4
ath00020 Citrate cycle (TCA cycle) 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 5
gma00280 Valine, leucine and isoleucine degradation 3
gma00999 Biosynthesis of various plant secondary metabolites 3
gma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00650 Butanoate metabolism 2
gma00900 Terpenoid backbone biosynthesis 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 5
sly00900 Terpenoid backbone biosynthesis 4
sly00280 Valine, leucine and isoleucine degradation 3
sly00650 Butanoate metabolism 3
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 6
sly00900 Terpenoid backbone biosynthesis 4
sly00280 Valine, leucine and isoleucine degradation 3
sly00650 Butanoate metabolism 3
sly00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00620 Pyruvate metabolism 4
osa00010 Glycolysis / Gluconeogenesis 3
osa01200 Carbon metabolism 3
osa00061 Fatty acid biosynthesis 2
osa00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01212 Fatty acid metabolism 9
zma01200 Carbon metabolism 6
zma00061 Fatty acid biosynthesis 6
zma01240 Biosynthesis of cofactors 6
zma00620 Pyruvate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01212 Fatty acid metabolism 6
zma00900 Terpenoid backbone biosynthesis 4
zma00061 Fatty acid biosynthesis 4
zma00280 Valine, leucine and isoleucine degradation 2
zma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00620 Pyruvate metabolism 9
bra01200 Carbon metabolism 9
bra00061 Fatty acid biosynthesis 8
bra01212 Fatty acid metabolism 8
bra00640 Propanoate metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 5
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
bra00061 Fatty acid biosynthesis 3
bra01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00900 Terpenoid backbone biosynthesis 2
vvi00310 Lysine degradation 2
vvi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ppo00670 One carbon pool by folate 3
ppo00270 Cysteine and methionine metabolism 3
ppo00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo01200 Carbon metabolism 6
ppo00900 Terpenoid backbone biosynthesis 4
ppo00010 Glycolysis / Gluconeogenesis 4
ppo00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 7
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00650 Butanoate metabolism 3
mtr00909 Sesquiterpenoid and triterpenoid biosynthesis 2
mtr00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 7
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00650 Butanoate metabolism 3
mtr00941 Flavonoid biosynthesis 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 7
tae01212 Fatty acid metabolism 7
tae01240 Biosynthesis of cofactors 6
tae00010 Glycolysis / Gluconeogenesis 5
tae00620 Pyruvate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 4
tae00020 Citrate cycle (TCA cycle) 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 6
ghi00650 Butanoate metabolism 6
ghi00900 Terpenoid backbone biosynthesis 6
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 7
ghi00650 Butanoate metabolism 7
ghi00900 Terpenoid backbone biosynthesis 7
ghi00330 Arginine and proline metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 7
bna00280 Valine, leucine and isoleucine degradation 5
bna00650 Butanoate metabolism 5
bna00040 Pentose and glucuronate interconversions 2
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 7
bna00280 Valine, leucine and isoleucine degradation 5
bna00650 Butanoate metabolism 5
bna00040 Pentose and glucuronate interconversions 2
bna00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 4
sbi00410 beta-Alanine metabolism 3
sbi00640 Propanoate metabolism 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 8
sot00280 Valine, leucine and isoleucine degradation 4
sot00650 Butanoate metabolism 4
sot00020 Citrate cycle (TCA cycle) 3
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 10
sot00280 Valine, leucine and isoleucine degradation 5
sot00650 Butanoate metabolism 5
sot01200 Carbon metabolism 4
sot00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 4
nta00650 Butanoate metabolism 4
nta00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 4
nta00650 Butanoate metabolism 4
nta00900 Terpenoid backbone biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826788 100782595 100794889 101260619 101249394 4346215 4331418 100384769 100285783 103828819 103853500 100244379 7478083 7479248 11429131 11438999 123093812 123165539 123449907 123407244 107963679 107929989 106418704 106380573 5721528 8057865 110433071 102601874 102584775 102610839 102629096 100833811 100846544 107798568 107816507
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