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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480063   structural maintenance of chromosomes protein 5 
 ppo-r.4   7480063   structural maintenance of chromosomes protein 5 
 ppo-m.4   7480063   structural maintenance of chromosomes protein 5 
 gma-u.5   100778678   structural maintenance of chromosomes protein 5 
 mtr-u.5   11409593   structural maintenance of chromosomes protein 5 
 mtr-u.5   11405711   structural maintenance of chromosomes protein 5 
 mtr-u.5   11446670   structural maintenance of chromosomes protein 5 
 ath-u.5   SMC5   structural maintenance of chromosomes 5 
 vvi-u.5   100249983   structural maintenance of chromosomes protein 5 
 sly-u.5   101255831   structural maintenance of chromosomes protein 5 
 osa-u.5   4339821   structural maintenance of chromosomes protein 5 
 zma-u.5   100381612   uncharacterized LOC100381612 

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Top 50 coexpressed genes to 7480063 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480063 (ppo-u.5 coexpression data)

CoexMap"7480063"


ppoLOC7480063 | Entrez gene ID : 7480063    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 1 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (74 genes)  IEA  
GO CC
GO:0030915 [list] [network] Smc5-Smc6 complex  (9 genes)  IEA  
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024454178.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  mito 1,  cyto_mito 1  (predict for XP_024454178.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_024454178.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480063

.
ppo-r.4
for
7480063

.
ppo-m.4
for
7480063

.
gma-u.5
for
100778678

.
mtr-u.5
for
11409593

.
mtr-u.5
for
11405711

.
mtr-u.5
for
11446670

.
ath-u.5
for
SMC5

.
vvi-u.5
for
100249983

.
sly-u.5
for
101255831

.
osa-u.5
for
4339821

.
zma-u.5
for
100381612

.


Ortholog ID: 9661
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SMC5 LOC100778678 LOC101255831 LOC4339821 LOC100381612 LOC103856172 LOC100249983 LOC7480063 LOC11446670 LOC11405711 LOC123150131 LOC123183433 LOC123452891 LOC107920194 LOC121212517 LOC106433168 LOC111204312 CHLRE_10g440200v5 LOC8061639 LOC102605381 LOC102630865 LOC100836248 LOC107792032 LOC107776932
Function* structural maintenance of chromosomes 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 uncharacterized LOC100381612 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 uncharacterized protein structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5 structural maintenance of chromosomes protein 5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03440 Homologous recombination 2
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03450 Non-homologous end-joining 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 6
mtr03015 mRNA surveillance pathway 3
mtr03020 RNA polymerase 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 4
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 2
sot00270 Cysteine and methionine metabolism 2
sot03440 Homologous recombination 2
sot03030 DNA replication 2
sot03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 3
bdi03420 Nucleotide excision repair 3
bdi03430 Mismatch repair 3
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831449 100778678 101255831 4339821 100381612 103856172 100249983 7480063 11446670 11405711 123150131 123183433 123452891 107920194 121212517 106433168 111204312 5716043 8061639 102605381 102630865 100836248 107792032 107776932
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