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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480773   protein RETICULATA-RELATED 1, chloroplastic 
 ppo-r.4   7480773   protein RETICULATA-RELATED 1, chloroplastic 
 ppo-m.4   7480773   protein RETICULATA-RELATED 1, chloroplastic 
 ppo-u.5   7486678   protein RETICULATA-RELATED 1, chloroplastic 
 gma-u.5   100783760   protein RETICULATA-RELATED 1, chloroplastic 
 gma-u.5   100805854   protein RETICULATA-RELATED 1, chloroplastic 
 mtr-u.5   11426203   protein RETICULATA-RELATED 1, chloroplastic 
 ath-u.5   AT5G24690   plant/protein, putative (DUF3411) 
 vvi-u.5   100246257   protein RETICULATA-RELATED 1, chloroplastic 
 sly-u.5   101257411   protein RETICULATA-RELATED 1, chloroplastic-like 
 sly-u.5   101249871   protein RETICULATA-RELATED 1, chloroplastic 
 osa-u.5   4351989   protein RETICULATA-RELATED 1, chloroplastic 
 zma-u.5   103640928   protein RETICULATA-RELATED 1, chloroplastic 
 zma-u.5   100192917   uncharacterized LOC100192917 

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Top 50 coexpressed genes to 7480773 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480773 (ppo-u.5 coexpression data)

CoexMap"7480773"


ppoLOC7480773 | Entrez gene ID : 7480773    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0099402 [list] [network] plant organ development  (87 genes)  IEA  
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (22 genes)  IEA  
GO MF
Protein XP_002303156.4 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  chlo 3,  E.R._plas 3  (predict for XP_002303156.4)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002303156.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480773

.
ppo-r.4
for
7480773

.
ppo-m.4
for
7480773

.
ppo-u.5
for
7486678

.
gma-u.5
for
100783760

.
gma-u.5
for
100805854

.
mtr-u.5
for
11426203

.
ath-u.5
for
AT5G24690

.
vvi-u.5
for
100246257

.
sly-u.5
for
101257411

.
sly-u.5
for
101249871

.
osa-u.5
for
4351989

.
zma-u.5
for
103640928

.
zma-u.5
for
100192917

.


Ortholog ID: 4623
Species ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G24690 LOC100783760 LOC100805854 LOC101249871 LOC101257411 LOC4351989 LOC103640928 LOC100192917 LOC103874341 LOC103837067 LOC100246257 LOC7480773 LOC7486678 LOC11426203 LOC123102802 LOC123120010 LOC123413351 LOC123400178 LOC107938875 LOC107945111 LOC106428455 LOC106366002 CHLRE_09g387000v5 LOC8086174 LOC102603902 LOC102582751 LOC102609179 LOC102620240 LOC100824955 LOC100839151 LOC107797548 LOC107814447
Function* plant/protein, putative (DUF3411) protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized LOC100192917 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like uncharacterized protein protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic-like uncharacterized LOC102609179 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized LOC107797548 uncharacterized LOC107814447
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 4
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00030 Pentose phosphate pathway 2
cre00710 Carbon fixation by Calvin cycle 2
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi00010 Glycolysis / Gluconeogenesis 3
bdi01200 Carbon metabolism 3
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00030 Pentose phosphate pathway 4
nta00230 Purine metabolism 4
nta01200 Carbon metabolism 4
nta00740 Riboflavin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832541 100783760 100805854 101249871 101257411 4351989 103640928 100192917 103874341 103837067 100246257 7480773 7486678 11426203 123102802 123120010 123413351 123400178 107938875 107945111 106428455 106366002 5719999 8086174 102603902 102582751 102609179 102620240 100824955 100839151 107797548 107814447
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