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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G24690   plant/protein, putative (DUF3411) 
 ath-r.7   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.9   AT5G24690   plant/protein, putative (DUF3411) 
 ath-e.2   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.4.bio   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.4.hor   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.4.lig   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.4.str   AT5G24690   plant/protein, putative (DUF3411) 
 ath-m.4.tis   AT5G24690   plant/protein, putative (DUF3411) 
 gma-u.5   100805854   protein RETICULATA-RELATED 1, chloroplastic 
 gma-u.5   100783760   protein RETICULATA-RELATED 1, chloroplastic 
 vvi-u.5   100246257   protein RETICULATA-RELATED 1, chloroplastic 
 ppo-u.5   7486678   protein RETICULATA-RELATED 1, chloroplastic 
 ppo-u.5   7480773   protein RETICULATA-RELATED 1, chloroplastic 
 mtr-u.5   11426203   protein RETICULATA-RELATED 1, chloroplastic 
 sly-u.5   101257411   protein RETICULATA-RELATED 1, chloroplastic-like 
 sly-u.5   101249871   protein RETICULATA-RELATED 1, chloroplastic 
 osa-u.5   4351989   protein RETICULATA-RELATED 1, chloroplastic 
 zma-u.5   103640928   protein RETICULATA-RELATED 1, chloroplastic 
 zma-u.5   100192917   uncharacterized LOC100192917 

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Top 50 coexpressed genes to AT5G24690 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G24690 (ath-u.5 coexpression data)

CoexMap"832541"


athAT5G24690 | Entrez gene ID : 832541      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009706 [list] [network] chloroplast inner membrane  (66 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_197857.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  chlo 3,  E.R. 1,  chlo_mito 1  (predict for NP_197857.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_197857.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G24690
ath-r.7
for
AT5G24690
ath-m.9
for
AT5G24690
ath-e.2
for
AT5G24690
ath-m.4.bio
for
AT5G24690
ath-m.4.hor
for
AT5G24690
ath-m.4.lig
for
AT5G24690
ath-m.4.str
for
AT5G24690
ath-m.4.tis
for
AT5G24690
gma-u.5
for
100805854
gma-u.5
for
100783760
vvi-u.5
for
100246257
ppo-u.5
for
7486678
ppo-u.5
for
7480773
mtr-u.5
for
11426203
sly-u.5
for
101257411
sly-u.5
for
101249871
osa-u.5
for
4351989
zma-u.5
for
103640928
zma-u.5
for
100192917


Ortholog ID: 4623
Species ath bra bra bna bna ghi ghi cit cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma zma tae tae hvu hvu sbi bdi bdi cre
Symbol AT5G24690 LOC103874341 LOC103837067 LOC106428455 LOC106366002 LOC107938875 LOC107945111 LOC102609179 LOC102620240 LOC100783760 LOC100805854 LOC100246257 LOC7480773 LOC7486678 LOC11426203 LOC101249871 LOC101257411 LOC102603902 LOC102582751 LOC107797548 LOC107814447 LOC4351989 LOC103640928 LOC100192917 LOC123102802 LOC123120010 LOC123413351 LOC123400178 LOC8086174 LOC100824955 LOC100839151 CHLRE_09g387000v5
Function* plant/protein, putative (DUF3411) protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized LOC102609179 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic-like uncharacterized LOC107797548 uncharacterized LOC107814447 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized LOC100192917 protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic-like protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic protein RETICULATA-RELATED 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00261 Monobactam biosynthesis 3
bna00300 Lysine biosynthesis 3
bna01230 Biosynthesis of amino acids 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00030 Pentose phosphate pathway 4
nta00230 Purine metabolism 4
nta01200 Carbon metabolism 4
nta00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 4
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00480 Glutathione metabolism 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi00010 Glycolysis / Gluconeogenesis 3
bdi01200 Carbon metabolism 3
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00030 Pentose phosphate pathway 2
cre00710 Carbon fixation by Calvin cycle 2
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832541 103874341 103837067 106428455 106366002 107938875 107945111 102609179 102620240 100783760 100805854 100246257 7480773 7486678 11426203 101249871 101257411 102603902 102582751 107797548 107814447 4351989 103640928 100192917 123102802 123120010 123413351 123400178 8086174 100824955 100839151 5719999
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