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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7480792   mediator of RNA polymerase II transcription subunit 15a 
 ppo-u.5   7480794   uncharacterized LOC7480794 
 ppo-u.5   18096666   mediator of RNA polymerase II transcription subunit 15a 
 ppo-u.5   18096645   mediator of RNA polymerase II transcription subunit 15a 
 gma-u.5   102660079   mediator of RNA polymerase II transcription subunit 15a 
 mtr-u.5   11418696   mediator of RNA polymerase II transcription subunit 15a 
 mtr-u.5   120580296   uncharacterized LOC120580296 
 mtr-u.5   11436839   mediator of RNA polymerase II transcription subunit 15a 
 ath-u.5   AT1G15790   mediator of RNA polymerase II transcription subunit 15a-like protein 
 vvi-u.5   104877881   mediator of RNA polymerase II transcription subunit 15a 
 sly-u.5   101250919   mediator of RNA polymerase II transcription subunit 15a 
 osa-u.5   4346081   mediator of RNA polymerase II transcription subunit 15a 

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Top 50 coexpressed genes to 7480792 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480792 (ppo-m.4 coexpression data)

CoexMap"7480792"


ppoLOC7480792 | Entrez gene ID : 7480792    
Species ppo gma mtr ath vvi sly osa sbi nta bra cre hvu cit bdi sot zma tae bna ghi
Paralog 4 1 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO MF
GO:0031490 [list] [network] chromatin DNA binding  (47 genes)  IEA  
GO:0003713 [list] [network] transcription coactivator activity  (49 genes)  IEA  
Protein XP_024452842.1 [sequence] [blastp]
XP_024452843.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_024452842.1)
nucl 6,  cyto_nucl 5,  cyto 3  (predict for XP_024452843.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_024452842.1)
other 9  (predict for XP_024452843.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7480792

.
ppo-u.5
for
7480794

.
ppo-u.5
for
18096666

.
ppo-u.5
for
18096645

.
gma-u.5
for
102660079

.
mtr-u.5
for
11418696

.
mtr-u.5
for
120580296

.
mtr-u.5
for
11436839

.
ath-u.5
for
AT1G15790

.
vvi-u.5
for
104877881

.
sly-u.5
for
101250919

.
osa-u.5
for
4346081

.


Ortholog ID: 3275
Species ath gma sly osa bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit cit nta nta
Symbol AT1G15790 LOC102660079 LOC101250919 LOC4346081 LOC103872372 LOC104877881 LOC18096645 LOC18096666 LOC11436839 LOC11418696 LOC123191095 LOC123149933 LOC123406175 LOC123428455 LOC107914148 LOC107897283 LOC106346813 LOC106346815 LOC8054819 LOC110436815 LOC102591617 LOC102617225 LOC102615750 LOC107776844 LOC107776212
Function* mediator of RNA polymerase II transcription subunit 15a-like protein mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a uncharacterized LOC123149933 mediator of RNA polymerase II transcription subunit 15a-like uncharacterized LOC123428455 mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a uncharacterized LOC106346813 mediator of RNA polymerase II transcription subunit 15a-like mediator of RNA polymerase II transcription subunit 15a uncharacterized LOC110436815 uncharacterized LOC102591617 mediator of RNA polymerase II transcription subunit 15a mediator of RNA polymerase II transcription subunit 15a-like uncharacterized LOC107776844 uncharacterized LOC107776212
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00040 Pentose and glucuronate interconversions 2
vvi00053 Ascorbate and aldarate metabolism 2
vvi00561 Glycerolipid metabolism 2
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
mtr04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 3
hvu00280 Valine, leucine and isoleucine degradation 3
hvu00640 Propanoate metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03250 Viral life cycle - HIV-1 2
sbi03272 Virion - Hepatitis viruses 2
sbi04144 Endocytosis 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
nta04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 3
nta04141 Protein processing in endoplasmic reticulum 3
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838148 102660079 101250919 4346081 103872372 104877881 18096645 18096666 11436839 11418696 123191095 123149933 123406175 123428455 107914148 107897283 106346813 106346815 8054819 110436815 102591617 102617225 102615750 107776844 107776212
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