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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7482395   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 ppo-r.4   7482395   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 ppo-m.4   7482395   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 ppo-u.5   18107657   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 gma-u.5   100812830   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 gma-u.5   100805249   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 mtr-u.5   11439682   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 mtr-u.5   11435355   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 mtr-u.5   120577607   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 ath-u.5   AT1G72550   tRNA synthetase beta subunit family protein 
 vvi-u.5   100261003   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 sly-u.5   101268498   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 osa-u.5   4339585   phenylalanine--tRNA ligase beta subunit, cytoplasmic 
 zma-u.5   100280512   uncharacterized LOC100280512 

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Top 50 coexpressed genes to 7482395 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7482395 (ppo-u.5 coexpression data)

CoexMap"7482395"


ppoLOC7482395 | Entrez gene ID : 7482395    
Species ppo gma mtr ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 2 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00970 [list] [network] Aminoacyl-tRNA biosynthesis (96 genes)
GO BP
GO:0006432 [list] [network] phenylalanyl-tRNA aminoacylation  (5 genes)  IEA  
GO CC
GO:0009328 [list] [network] phenylalanine-tRNA ligase complex  (4 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004826 [list] [network] phenylalanine-tRNA ligase activity  (5 genes)  IEA  
GO:0000287 [list] [network] magnesium ion binding  (131 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_052302451.1 [sequence] [blastp]
XP_052302452.1 [sequence] [blastp]
XP_052302453.1 [sequence] [blastp]
XP_052302454.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  mito 1  (predict for XP_052302451.1)
chlo 4,  cyto 4,  nucl 1,  mito 1,  plas 1,  extr 1,  nucl_plas 1,  mito_plas 1  (predict for XP_052302452.1)
chlo 4,  cyto 2,  nucl 1,  mito 1,  cyto_plas 1  (predict for XP_052302453.1)
cyto 4,  chlo 3,  nucl 1,  mito 1  (predict for XP_052302454.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_052302451.1)
other 7,  mito 3  (predict for XP_052302452.1)
other 7,  mito 3  (predict for XP_052302453.1)
other 7,  mito 3  (predict for XP_052302454.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7482395
ppo-r.4
for
7482395
ppo-m.4
for
7482395
ppo-u.5
for
18107657
gma-u.5
for
100812830
gma-u.5
for
100805249
mtr-u.5
for
11439682
mtr-u.5
for
11435355
mtr-u.5
for
120577607
ath-u.5
for
AT1G72550
vvi-u.5
for
100261003
sly-u.5
for
101268498
osa-u.5
for
4339585
zma-u.5
for
100280512


Ortholog ID: 6439
Species ppo ppo gma gma mtr mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu hvu sbi sbi bdi cre
Symbol LOC18107657 LOC7482395 LOC100812830 LOC100805249 LOC11439682 LOC120577607 AT1G72550 LOC103846367 LOC100261003 LOC107943081 LOC107931066 LOC106372194 LOC106424758 LOC102630397 LOC101268498 LOC102579212 LOC107770299 LOC107773132 LOC4339585 LOC100280512 LOC123126274 LOC123119880 LOC123436492 LOC123451894 LOC8064013 LOC8069508 LOC100821229 CHLRE_13g603900v5
Function* phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic tRNA synthetase beta subunit family protein phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic-like phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic uncharacterized LOC100280512 phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic-like phenylalanine--tRNA ligase beta subunit, cytoplasmic-like phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic phenylalanine--tRNA ligase beta subunit, cytoplasmic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 5
ppo03010 Ribosome 2
ppo00300 Lysine biosynthesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 6
ppo00970 Aminoacyl-tRNA biosynthesis 5
ppo00510 N-Glycan biosynthesis 5
ppo00513 Various types of N-glycan biosynthesis 4
ppo01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 4
gma00513 Various types of N-glycan biosynthesis 4
gma04141 Protein processing in endoplasmic reticulum 4
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 6
bra03010 Ribosome 3
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 8
ghi03040 Spliceosome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00230 Purine metabolism 2
ghi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 8
ghi00261 Monobactam biosynthesis 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 8
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03050 Proteasome 3
sly04142 Lysosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
tae00450 Selenocompound metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 6
sbi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18107657 7482395 100812830 100805249 11439682 120577607 843587 103846367 100261003 107943081 107931066 106372194 106424758 102630397 101268498 102579212 107770299 107773132 4339585 100280512 123126274 123119880 123436492 123451894 8064013 8069508 100821229 5724671
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