ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7483754	B3 domain-containing protein REM16
ppo-r.4	7483754	B3 domain-containing protein REM16
ppo-m.4	7483754	B3 domain-containing protein REM16
gma-u.5	100777709	B3 domain-containing protein REM16
gma-u.5	100813851	B3 domain-containing protein
mtr-u.5	11420401	B3 domain-containing protein REM16
mtr-u.5	11414255	B3 domain-containing transcription factor VRN1
mtr-u.5	11418171	B3 domain-containing protein REM16
sly-u.5	101257140	B3 domain-containing protein REM16-like
zma-u.5	100193780	B3 domain-containing protein

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2205 genes)

IEA

Protein

XP_002301205.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_002301205.3)

Subcellular
localization
TargetP

other 7

(predict for XP_002301205.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7483754	ppo-r.4 for 7483754	ppo-m.4 for 7483754	gma-u.5 for 100777709	gma-u.5 for 100813851	mtr-u.5 for 11420401	mtr-u.5 for 11414255	mtr-u.5 for 11418171	sly-u.5 for 101257140	zma-u.5 for 100193780

Ortholog ID: 3129

Species

ppo

gma

mtr

ghi

cit

sly

zma

sbi

Symbol

Function^*

B3 domain-containing protein REM16

B3 domain-containing protein

B3 domain-containing protein REM16

B3 domain-containing protein REM16-like

B3 domain-containing protein

B3 domain-containing protein Os12g0592300

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00061	Fatty acid biosynthesis	4
gma01212	Fatty acid metabolism	4
gma00620	Pyruvate metabolism	3
gma01240	Biosynthesis of cofactors	3
gma00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00100	Steroid biosynthesis	2
ghi04142	Lysosome	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
sbi01230	Biosynthesis of amino acids	4
sbi03010	Ribosome	3
sbi00260	Glycine, serine and threonine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

7483754

100813851

100777709

11418171

11419210

107922557

121229454

102606934

101257140

100193780

8076618

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7483754 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7483754 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	sly	zma	bdi	hvu	bra	vvi	cit	bna	ath	sbi	ghi	osa	sot	nta	cre	tae
Paralog	3	2	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7483754 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7483754 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**