ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-m.4	7490654	transcription factor E2FC
gma-u.5	100797301	transcription factor E2FC
mtr-u.5	11428881	transcription factor E2FC
ath-u.5	ATE2F2	winged-helix DNA-binding transcription factor family protein
vvi-u.5	100247139	transcription factor E2FC
sly-u.5	101248386	transcription factor E2FC

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(481 genes)

IEA

GO CC

GO:0090575 [list] [network] RNA polymerase II transcription regulator complex

(103 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(266 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(338 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(520 genes)	IEA

Protein

XP_024450667.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_024450667.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_024450667.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7490654	gma-u.5 for 100797301	mtr-u.5 for 11428881	ath-u.5 for ATE2F2	vvi-u.5 for 100247139	sly-u.5 for 101248386

Ortholog ID: 14065

Species

gma

mtr

ath

bra

vvi

bna

cit

sly

sot

nta

Symbol

ATE2F2

Function^*

transcription factor E2FC

winged-helix DNA-binding transcription factor family protein

transcription factor E2FC

transcription factor E2FC-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	6
ath03420	Nucleotide excision repair	4
ath03430	Mismatch repair	3
ath03440	Homologous recombination	3
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	5
sly00010	Glycolysis / Gluconeogenesis	4
sly01200	Carbon metabolism	4
sly00710	Carbon fixation by Calvin cycle	3
sly03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03030	DNA replication	9
sot03410	Base excision repair	2
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

100797301

11428881

841202

103833054

100247139

106429362

102625601

101248386

102594398

107781702

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7490654 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7490654 (ppo-m.4 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	bdi	hvu	bra	cit	bna	sbi	ghi	osa	sot	nta	cre	tae	zma
Paralog	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7490654 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7490654 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**