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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7490789   anaphase-promoting complex subunit 4 
 ppo-r.4   7490789   anaphase-promoting complex subunit 4 
 gma-u.5   100527617   anaphase-promoting complex subunit 4 
 mtr-u.5   11421313   anaphase-promoting complex subunit 4 
 ath-u.5   APC4   Transducin/WD40 repeat-like superfamily protein 
 vvi-u.5   100255109   anaphase-promoting complex subunit 4 
 sly-u.5   101255653   anaphase-promoting complex subunit 4 
 osa-u.5   4330947   anaphase-promoting complex subunit 4 
 zma-u.5   103637954   Anaphase-promoting complex subunit 4 
 zma-u.5   100304372   uncharacterized LOC100304372 

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Top 50 coexpressed genes to 7490789 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7490789 (ppo-u.5 coexpression data)

CoexMap"7490789"


ppoLOC7490789 | Entrez gene ID : 7490789    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
GO BP
GO:0045842 [list] [network] positive regulation of mitotic metaphase/anaphase transition  (3 genes)  IEA  
GO:0070979 [list] [network] protein K11-linked ubiquitination  (7 genes)  IEA  
GO:0031145 [list] [network] anaphase-promoting complex-dependent catabolic process  (15 genes)  IEA  
GO CC
GO:0034399 [list] [network] nuclear periphery  (2 genes)  IEA  
GO:0005680 [list] [network] anaphase-promoting complex  (20 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002304999.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_002304999.3)
Subcellular
localization
TargetP
other 9  (predict for XP_002304999.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7490789

.
ppo-r.4
for
7490789

.
gma-u.5
for
100527617

.
mtr-u.5
for
11421313

.
ath-u.5
for
APC4

.
vvi-u.5
for
100255109

.
sly-u.5
for
101255653

.
osa-u.5
for
4330947

.
zma-u.5
for
103637954

.
zma-u.5
for
100304372

.


Ortholog ID: 9040
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol APC4 LOC100527617 LOC101255653 LOC4330947 LOC103637954 LOC103859125 LOC100255109 LOC7490789 LOC11421313 LOC123145810 LOC123128677 LOC123448353 LOC123404004 LOC107925255 LOC121222289 LOC106375728 LOC125578104 CHLRE_12g556650v5 LOC8082701 LOC102591780 LOC102627214 LOC100825517 LOC107831050 LOC107771175
Function* Transducin/WD40 repeat-like superfamily protein anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 Anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4-like anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 uncharacterized protein anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4 anaphase-promoting complex subunit 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03440 Homologous recombination 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly03020 RNA polymerase 2
sly03008 Ribosome biogenesis in eukaryotes 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 10
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
hvu00230 Purine metabolism 2
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03250 Viral life cycle - HIV-1 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03250 Viral life cycle - HIV-1 6
ghi04120 Ubiquitin mediated proteolysis 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 7
bna04814 Motor proteins 2
bna03460 Fanconi anemia pathway 2
bna03030 DNA replication 2
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna03460 Fanconi anemia pathway 3
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
sbi03460 Fanconi anemia pathway 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 2
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 4
nta04120 Ubiquitin mediated proteolysis 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 3
nta04120 Ubiquitin mediated proteolysis 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828238 100527617 101255653 4330947 103637954 103859125 100255109 7490789 11421313 123145810 123128677 123448353 123404004 107925255 121222289 106375728 125578104 5719758 8082701 102591780 102627214 100825517 107831050 107771175
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