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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7490830   KH domain-containing protein At4g18375 
 ppo-r.4   7490830   KH domain-containing protein At4g18375 
 ppo-u.5   7495314   KH domain-containing protein At4g18375 
 gma-u.5   100801062   KH domain-containing protein At4g18375 
 mtr-u.5   120577447   KH domain-containing protein At4g18375 
 mtr-u.5   11439323   KH domain-containing protein At4g18375 
 ath-u.5   AT4G18375   RNA-binding KH domain-containing protein 
 ath-u.5   AT5G46190   RNA-binding KH domain-containing protein 
 vvi-u.5   100261680   KH domain-containing protein At4g18375 
 sly-u.5   101248503   KH domain-containing protein At4g18375 
 osa-u.5   4344900   KH domain-containing protein At4g18375 
 zma-u.5   103645654   KH domain-containing protein At4g18375-like 
 zma-u.5   109946006   KH domain-containing protein At4g18375 
 zma-u.5   100384498   RNA-binding KH domain-containing protein 

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Top 50 coexpressed genes to 7490830 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7490830 (ppo-u.5 coexpression data)

CoexMap"7490830"


ppoLOC7490830 | Entrez gene ID : 7490830    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (2323 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_002305041.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  E.R. 4,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_002305041.2)
Subcellular
localization
TargetP
other 8  (predict for XP_002305041.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7490830

.
ppo-r.4
for
7490830

.
ppo-u.5
for
7495314

.
gma-u.5
for
100801062

.
mtr-u.5
for
120577447

.
mtr-u.5
for
11439323

.
ath-u.5
for
AT4G18375

.
ath-u.5
for
AT5G46190

.
vvi-u.5
for
100261680

.
sly-u.5
for
101248503

.
osa-u.5
for
4344900

.
zma-u.5
for
103645654

.
zma-u.5
for
109946006

.
zma-u.5
for
100384498

.


Ortholog ID: 6040
Species ath ath gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G46190 AT4G18375 LOC100801062 LOC101248503 LOC4344900 LOC109946006 LOC103645654 LOC103827748 LOC103856291 LOC100261680 LOC7490830 LOC7495314 LOC120577447 LOC11439323 LOC123063579 LOC123114325 LOC123395111 LOC123445624 LOC107891745 LOC107889039 LOC106401685 LOC106357469 LOC8085026 LOC102583330 LOC102616634 LOC100827182 LOC107819928 LOC107814867
Function* RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375-like KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375 KH domain-containing protein At4g18375
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04145 Phagosome 3
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 3
bna04712 Circadian rhythm - plant 2
bna04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 6
bna00513 Various types of N-glycan biosynthesis 4
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03250 Viral life cycle - HIV-1 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834661 827566 100801062 101248503 4344900 109946006 103645654 103827748 103856291 100261680 7490830 7495314 120577447 11439323 123063579 123114325 123395111 123445624 107891745 107889039 106401685 106357469 8085026 102583330 102616634 100827182 107819928 107814867
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