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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7492491   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ppo-r.4   7492491   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ppo-m.4   7492491   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ppo-u.5   7467795   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100820145   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100811564   protein PIGMENT DEFECTIVE 338, chloroplastic 
 gma-u.5   100780996   protein PIGMENT DEFECTIVE 338, chloroplastic 
 mtr-u.5   25485041   protein PIGMENT DEFECTIVE 338, chloroplastic 
 ath-u.5   PDE338   Nucleic acid-binding proteins superfamily 
 vvi-u.5   100240915   protein PIGMENT DEFECTIVE 338, chloroplastic 
 sly-u.5   101263198   protein PIGMENT DEFECTIVE 338, chloroplastic 
 osa-u.5   4324446   protein PIGMENT DEFECTIVE 338, chloroplastic 
 osa-u.5   4339443   protein PIGMENT DEFECTIVE 338, chloroplastic 
 zma-u.5   103630659   uncharacterized LOC103630659 
 zma-u.5   100193118   uncharacterized LOC100193118 

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Top 50 coexpressed genes to 7492491 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7492491 (ppo-u.5 coexpression data)

CoexMap"7492491"


ppoLOC7492491 | Entrez gene ID : 7492491    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 3 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
GO BP
GO:0043489 [list] [network] RNA stabilization  (4 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_024456047.2 [sequence] [blastp]
XP_024456049.2 [sequence] [blastp]
XP_052309330.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_024456047.2)
chlo 10  (predict for XP_024456049.2)
chlo 10  (predict for XP_052309330.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_024456047.2)
chlo 9  (predict for XP_024456049.2)
chlo 9  (predict for XP_052309330.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7492491

.
ppo-r.4
for
7492491

.
ppo-m.4
for
7492491

.
ppo-u.5
for
7467795

.
gma-u.5
for
100820145

.
gma-u.5
for
100811564

.
gma-u.5
for
100780996

.
mtr-u.5
for
25485041

.
ath-u.5
for
PDE338

.
vvi-u.5
for
100240915

.
sly-u.5
for
101263198

.
osa-u.5
for
4324446

.
osa-u.5
for
4339443

.
zma-u.5
for
103630659

.
zma-u.5
for
100193118

.


Ortholog ID: 6438
Species ath gma gma sly osa osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol PDE338 LOC100811564 LOC100820145 LOC101263198 LOC4324446 LOC4339443 LOC103630659 LOC100193118 LOC103831680 LOC100240915 LOC7467795 LOC7492491 LOC25485041 LOC123070022 LOC123078481 LOC123448389 LOC123443792 LOC107910474 LOC121214605 LOC106381078 BNAA07G29500D LOC8082461 LOC8068985 LOC102580008 LOC102610673 LOC100833069 LOC100830014 LOC107763574 LOC107768976
Function* Nucleic acid-binding proteins superfamily protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic uncharacterized LOC103630659 uncharacterized LOC100193118 protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic-like protein PIGMENT DEFECTIVE 338, chloroplastic-like protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic protein PIGMENT DEFECTIVE 338, chloroplastic 30S ribosomal protein S1 30S ribosomal protein S1 homolog A 30S ribosomal protein S1 homolog A protein PIGMENT DEFECTIVE 338, chloroplastic uncharacterized LOC100833069 30S ribosomal protein S1 homolog A protein PIGMENT DEFECTIVE 338, chloroplastic-like protein PIGMENT DEFECTIVE 338, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843502 100811564 100820145 101263198 4324446 4339443 103630659 100193118 103831680 100240915 7467795 7492491 25485041 123070022 123078481 123448389 123443792 107910474 121214605 106381078 106354165 8082461 8068985 102580008 102610673 100833069 100830014 107763574 107768976
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