ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7497284	rho GTPase-activating protein 3
ppo-r.4	7497284	rho GTPase-activating protein 3
ppo-u.5	7466261	rho GTPase-activating protein 2
ppo-u.5	7486797	rho GTPase-activating protein 3
ppo-u.5	7491933	rho GTPase-activating protein 5
gma-u.5	121172725	rho GTPase-activating protein 5
gma-u.5	100807134	rho GTPase-activating protein 2
gma-u.5	100812700	rho GTPase-activating protein 2
mtr-u.5	11412913	rho GTPase-activating protein 5
mtr-u.5	11444022	rho GTPase-activating protein 3
mtr-u.5	11430687	rho GTPase-activating protein 5
ath-u.5	ROPGAP3	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
ath-u.5	AT3G11490	rac GTPase activating protein
ath-u.5	AT4G03100	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein
bra-r.6	103846905	rho GTPase-activating protein 2
bra-r.6	103871580	rho GTPase-activating protein 5
bra-r.6	103845972	rho GTPase-activating protein 4
vvi-u.5	100258031	rho GTPase-activating protein 5
vvi-u.5	100252743	rho GTPase-activating protein 2
vvi-u.5	100245390	rho GTPase-activating protein 5
ghi-r.1	107933519	rho GTPase-activating protein 3
ghi-r.1	107925685	rho GTPase-activating protein 5
ghi-r.1	107924503	rho GTPase-activating protein 2
bna-r.1	111215948	rho GTPase-activating protein 4-like
bna-r.1	125608395	rho GTPase-activating protein 3-like
bna-r.1	106435734	rho GTPase-activating protein 4
cit-r.1	102617500	rho GTPase-activating protein 4-like
cit-r.1	102622462	rho GTPase-activating protein 2
cit-r.1	102621050	rho GTPase-activating protein 5
sly-u.5	101263759	Rho GTPase activating protein 2
sly-u.5	101262176	rho GTPase-activating protein 5
sly-u.5	101263756	rho GTPase-activating protein 2
sot-r.1	102600997	rho GTPase-activating protein 5
sot-r.1	102604638	rho GTPase-activating protein 2-like
sot-r.1	102594321	rho GTPase-activating protein 2-like
nta-r.1	107812553	rho GTPase-activating protein 2-like
nta-r.1	107768544	rho GTPase-activating protein 2
nta-r.1	107761664	rho GTPase-activating protein 3
osa-u.5	4324006	rho GTPase-activating protein 1
osa-u.5	4352405	rho GTPase-activating protein 2
osa-u.5	4330316	rho GTPase-activating protein 5
zma-u.5	100279404	uncharacterized LOC100279404
zma-u.5	100194213	Rho GTPase-activating protein 3
zma-u.5	100282297	rac GTPase activating protein
tae-r.2	123043390	rho GTPase-activating protein 5
tae-r.2	123086500	rho GTPase-activating protein 4
hvu-r.1	123429263	rho GTPase-activating protein 5-like
hvu-r.1	123427437	rho GTPase-activating protein 5-like
sbi-r.1	8073216	rho GTPase-activating protein 5
sbi-r.1	8067224	rho GTPase-activating protein 2
sbi-r.1	8060422	rho GTPase-activating protein 5
bdi-r.1	100842082	rho GTPase-activating protein 5
bdi-r.1	100839935	rho GTPase-activating protein 2
bdi-r.1	100826387	rho GTPase-activating protein 4

Top 50 coexpressed genes to 7497284 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7497284 (ppo-u.5 coexpression data)

CoexMap"7497284"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007165 [list] [network] signal transduction

(941 genes)

IEA

GO CC

GO MF

GO:0005096 [list] [network] GTPase activator activity

(74 genes)

IEA

Protein

XP_002301430.2 [sequence] [blastp]
XP_024450242.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 1, chlo 1, plas 1, cysk 1, cyto_mito 1, cysk_plas 1	(predict for XP_002301430.2)
nucl 6, mito 1, cysk 1	(predict for XP_024450242.1)

Subcellular
localization
TargetP

other 6, mito 3	(predict for XP_002301430.2)
other 6, mito 3	(predict for XP_024450242.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7497284	ppo-r.4 for 7497284	ppo-u.5 for 7466261	ppo-u.5 for 7486797	ppo-u.5 for 7491933	gma-u.5 for 121172725	gma-u.5 for 100807134	gma-u.5 for 100812700	mtr-u.5 for 11412913	mtr-u.5 for 11444022	mtr-u.5 for 11430687	ath-u.5 for ROPGAP3	ath-u.5 for AT3G11490	ath-u.5 for AT4G03100	bra-r.6 for 103846905	bra-r.6 for 103871580	bra-r.6 for 103845972	vvi-u.5 for 100258031	vvi-u.5 for 100252743	vvi-u.5 for 100245390	ghi-r.1 for 107933519	ghi-r.1 for 107925685	ghi-r.1 for 107924503	bna-r.1 for 111215948	bna-r.1 for 125608395	bna-r.1 for 106435734	cit-r.1 for 102617500	cit-r.1 for 102622462	cit-r.1 for 102621050	sly-u.5 for 101263759	sly-u.5 for 101262176	sly-u.5 for 101263756	sot-r.1 for 102600997	sot-r.1 for 102604638	sot-r.1 for 102594321	nta-r.1 for 107812553	nta-r.1 for 107768544	nta-r.1 for 107761664	osa-u.5 for 4324006	osa-u.5 for 4352405	osa-u.5 for 4330316	zma-u.5 for 100279404	zma-u.5 for 100194213	zma-u.5 for 100282297	tae-r.2 for 123043390	tae-r.2 for 123086500	hvu-r.1 for 123429263	hvu-r.1 for 123427437	sbi-r.1 for 8073216	sbi-r.1 for 8067224	sbi-r.1 for 8060422	bdi-r.1 for 100842082	bdi-r.1 for 100839935	bdi-r.1 for 100826387

Ortholog

Ortholog ID: 343

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ROPGAP3

Function^*

rho GTPase-activating protein 3

rho GTPase-activating protein 2

rho GTPase-activating protein 5

rho GTPase-activating protein 3

rho GTPase-activating protein 5

Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein

rac GTPase activating protein

Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein

rho GTPase-activating protein 2

rho GTPase-activating protein 3

rho GTPase-activating protein 2

rho GTPase-activating protein 5

rho GTPase-activating protein 2

rho GTPase-activating protein 5

rho GTPase-activating protein 2

rho GTPase-activating protein 2-like

rho GTPase-activating protein 4-like

rho GTPase-activating protein 5

rho GTPase-activating protein 3

rho GTPase-activating protein 5

rho GTPase-activating protein 2

rho GTPase-activating protein 5-like

rho GTPase-activating protein 5

rho GTPase-activating protein 2-like

rho GTPase-activating protein 3

rho GTPase-activating protein 1

rho GTPase-activating protein 2

rho GTPase-activating protein 5

rho GTPase-activating protein 4

uncharacterized LOC100279404

uncharacterized LOC100284449

rho GTPase-activating protein 4

rho GTPase-activating protein 5

rho GTPase-activating protein 5-like

rho GTPase-activating protein 5

rho GTPase-activating protein 4

rho GTPase-activating protein 5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	3
ppo03018	RNA degradation	3
ppo00620	Pyruvate metabolism	2
ppo01200	Carbon metabolism	2
ppo00061	Fatty acid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04145	Phagosome	2
ppo04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04145	Phagosome	2
ath04148	Efferocytosis	2
ath04517	IgSF CAM signaling	2
ath04518	Integrin signaling	2
ath04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	3
cit00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00740	Riboflavin metabolism	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00531	Glycosaminoglycan degradation	2
nta00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	6
zma04517	IgSF CAM signaling	6
zma04814	Motor proteins	5
zma04075	Plant hormone signal transduction	3
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00480	Glutathione metabolism	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00999	Biosynthesis of various plant secondary metabolites	2
sbi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

7497284

7466261

7465261

100798012

100776004

100783118

11444022

11430687

819283

820322

832301

103858718

103866441

100252743

100245390

100243219

107924503

107889176

121220109

106431496

102617500

102621050

102615569

101262176

101263756

101250330

102600997

102594321

102597681

107761664

107773814

107800863

4330316

4336743

4351541

100279404

100284449

123102990

123187219

123429263

123427437

123402360

8073216

8060422

100842082

100826387

100829025

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	3	3	3	3	3	3	3	3	3	2	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7497284 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7497284 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**