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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7497607   DNA repair protein recA homolog 3, mitochondrial 
 ppo-r.4   7497607   DNA repair protein recA homolog 3, mitochondrial 
 ppo-m.4   7497607   DNA repair protein recA homolog 3, mitochondrial 
 ppo-u.5   18107678   DNA repair protein recA homolog 3, mitochondrial 
 gma-u.5   100807627   DNA repair protein recA homolog 3, mitochondrial 
 gma-u.5   100798983   DNA repair protein recA homolog 3, mitochondrial 
 mtr-u.5   11440646   DNA repair protein recA homolog 3, mitochondrial 
 mtr-u.5   25494222   DNA repair protein recA homolog 3, mitochondrial 
 ath-u.5   RECA2   recA DNA recombination family protein 
 vvi-u.5   100257827   DNA repair protein recA homolog 3, mitochondrial 
 sly-u.5   101260233   DNA repair protein recA homolog 3, mitochondrial 
 osa-u.5   4325041   DNA repair protein recA homolog 3, mitochondrial 
 osa-u.5   4350329   DNA repair protein recA homolog 3, mitochondrial 
 zma-u.5   100384162   putative recA DNA recombination family protein 
 zma-u.5   100191367   uncharacterized LOC100191367 

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Top 50 coexpressed genes to 7497607 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7497607 (ppo-u.5 coexpression data)

CoexMap"7497607"


ppoLOC7497607 | Entrez gene ID : 7497607    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (62 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002308284.1 [sequence] [blastp]
XP_024460404.1 [sequence] [blastp]
XP_024460405.1 [sequence] [blastp]
XP_024460406.1 [sequence] [blastp]
XP_024460407.1 [sequence] [blastp]
XP_024460408.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002308284.1)
chlo 8,  mito 2  (predict for XP_024460404.1)
chlo 8,  mito 2  (predict for XP_024460405.1)
chlo 9,  mito 1  (predict for XP_024460406.1)
chlo 9,  mito 1  (predict for XP_024460407.1)
chlo 8,  mito 2  (predict for XP_024460408.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_002308284.1)
mito 9  (predict for XP_024460404.1)
mito 9  (predict for XP_024460405.1)
mito 9  (predict for XP_024460406.1)
mito 9  (predict for XP_024460407.1)
mito 9  (predict for XP_024460408.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7497607

.
ppo-r.4
for
7497607

.
ppo-m.4
for
7497607

.
ppo-u.5
for
18107678

.
gma-u.5
for
100807627

.
gma-u.5
for
100798983

.
mtr-u.5
for
11440646

.
mtr-u.5
for
25494222

.
ath-u.5
for
RECA2

.
vvi-u.5
for
100257827

.
sly-u.5
for
101260233

.
osa-u.5
for
4325041

.
osa-u.5
for
4350329

.
zma-u.5
for
100384162

.
zma-u.5
for
100191367

.


Ortholog ID: 5946
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol RECA2 LOC100798983 LOC100807627 LOC101260233 LOC4350329 LOC4325041 LOC100191367 LOC100384162 LOC103849257 LOC103842639 LOC100257827 LOC18107678 LOC7497607 LOC11440646 LOC25494222 LOC123062829 LOC123080022 LOC123445033 LOC107893333 LOC107897727 LOC106356751 LOC106369098 LOC8056121 LOC102594430 LOC102614724 LOC100846188 LOC107760769 LOC107805436
Function* recA DNA recombination family protein DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial uncharacterized LOC100191367 putative recA DNA recombination family protein DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial protein RecA DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial DNA repair protein recA homolog 3, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 3
gma03082 ATP-dependent chromatin remodeling 3
gma03440 Homologous recombination 2
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 3
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
nta03018 RNA degradation 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816468 100798983 100807627 101260233 4350329 4325041 100191367 100384162 103849257 103842639 100257827 18107678 7497607 11440646 25494222 123062829 123080022 123445033 107893333 107897727 106356751 106369098 8056121 102594430 102614724 100846188 107760769 107805436
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