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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   778264   green ripe-like 1 
 sly-r.6   778264   green ripe-like 1 
 sly-m.5   778264   green ripe-like 1 
 sly-u.5   778262   green ripe 
 sly-u.5   778265   green ripe-like 2 
 ath-u.5   RTE1   protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778) 
 ath-u.5   RTH   RTE1-homolog 
 gma-u.5   100817575   transmembrane protein 222-like 
 gma-u.5   100527909   uncharacterized LOC100527909 
 gma-u.5   100779664   transmembrane protein 222-like 
 vvi-u.5   100250722   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 vvi-u.5   100259075   protein RTE1-HOMOLOG 
 ppo-u.5   7480152   protein RTE1-HOMOLOG 
 ppo-u.5   7476648   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 ppo-u.5   7470704   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 mtr-u.5   11412169   protein RTE1-HOMOLOG 
 mtr-u.5   11418141   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 osa-u.5   4339461   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 osa-u.5   4334443   protein RTE1-HOMOLOG 
 osa-u.5   4325934   protein REVERSION-TO-ETHYLENE SENSITIVITY1 
 zma-u.5   100278855   reversion-to-ethylene sensitivity1 like1 
 zma-u.5   100276900   uncharacterized LOC100276900 
 zma-u.5   100276634   reversion-to-ethylene sensitivity1 like3 

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Top 50 coexpressed genes to 778264 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 778264 (sly-u.5 coexpression data)

CoexMap"778264"


slyLOC778264 | Entrez gene ID : 778264    
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 2 3 2 3 2 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04016 [list] [network] MAPK signaling pathway - plant (194 genes)
GO BP
GO:0010104 [list] [network] regulation of ethylene-activated signaling pathway  (6 genes)  IEA  
GO:0009723 [list] [network] response to ethylene  (85 genes)  IEA  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (494 genes)  IEA  
GO:0005783 [list] [network] endoplasmic reticulum  (509 genes)  IEA  
GO MF
Protein NP_001233902.1 [sequence] [blastp]
XP_010324963.1 [sequence] [blastp]
XP_019070582.1 [sequence] [blastp]
XP_069143732.1 [sequence] [blastp]
XP_069143733.1 [sequence] [blastp]
XP_069143734.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for NP_001233902.1)
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_010324963.1)
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_019070582.1)
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_069143732.1)
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_069143733.1)
nucl 2,  cyto 2,  cyto_nucl 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_069143734.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001233902.1)
other 7  (predict for XP_010324963.1)
other 7  (predict for XP_019070582.1)
other 7  (predict for XP_069143732.1)
other 7  (predict for XP_069143733.1)
other 7  (predict for XP_069143734.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
778264

.
sly-r.6
for
778264

.
sly-m.5
for
778264

.
sly-u.5
for
778262

.
sly-u.5
for
778265

.
ath-u.5
for
RTE1

.
ath-u.5
for
RTH

.
gma-u.5
for
100817575

.
gma-u.5
for
100527909

.
gma-u.5
for
100779664

.
vvi-u.5
for
100250722

.
vvi-u.5
for
100259075

.
ppo-u.5
for
7480152

.
ppo-u.5
for
7476648

.
ppo-u.5
for
7470704

.
mtr-u.5
for
11412169

.
mtr-u.5
for
11418141

.
osa-u.5
for
4339461

.
osa-u.5
for
4334443

.
osa-u.5
for
4325934

.
zma-u.5
for
100278855

.
zma-u.5
for
100276900

.
zma-u.5
for
100276634

.


Ortholog ID: 2388
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol RTH RTE1 LOC100786957 LOC100527909 LOC778262 LOC778264 LOC4339461 LOC4325934 LOC100278855 LOC100193900 LOC103842162 LOC103872640 LOC100259075 LOC100250722 LOC7480152 LOC7470704 LOC11418141 LOC11412169 LOC123113736 LOC123123248 LOC123444254 LOC123452768 LOC107897613 LOC107914285 LOC106391068 LOC106368544 CHLRE_12g540750v5 LOC8059174 LOC8081240 LOC102577924 LOC102598150 LOC102629175 LOC102624932 LOC100846409 LOC107831598 LOC142172988
Function* RTE1-homolog protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778) transmembrane protein 222-like uncharacterized LOC100527909 green ripe green ripe-like 1 protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein REVERSION-TO-ETHYLENE SENSITIVITY1 reversion-to-ethylene sensitivity1 like1 uncharacterized LOC100193900 protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG protein RTE1-HOMOLOG protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG protein RTE1-HOMOLOG protein RTE1-HOMOLOG protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG protein RTE1-HOMOLOG protein RTE1-HOMOLOG protein RTE1-HOMOLOG-like protein REVERSION-TO-ETHYLENE SENSITIVITY1 uncharacterized protein protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG green ripe-like 1 protein RTE1-HOMOLOG protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein RTE1-HOMOLOG protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein REVERSION-TO-ETHYLENE SENSITIVITY1 protein REVERSION-TO-ETHYLENE SENSITIVITY1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 6
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 3
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 5
osa04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 4
osa04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 6
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
zma04016 MAPK signaling pathway - plant 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 7
bra04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 8
vvi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 11
ppo04075 Plant hormone signal transduction 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 7
mtr04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 3
mtr03015 mRNA surveillance pathway 2
mtr04136 Autophagy - other 2
mtr04382 Cornified envelope formation 2
mtr04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03050 Proteasome 4
tae03040 Spliceosome 3
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae04016 MAPK signaling pathway - plant 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 4
hvu04075 Plant hormone signal transduction 4
hvu03060 Protein export 2
hvu04130 SNARE interactions in vesicular transport 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00600 Sphingolipid metabolism 4
bna00966 Glucosinolate biosynthesis 3
bna01210 2-Oxocarboxylic acid metabolism 3
bna03030 DNA replication 2
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 6
bna00280 Valine, leucine and isoleucine degradation 6
bna00592 alpha-Linolenic acid metabolism 6
bna01040 Biosynthesis of unsaturated fatty acids 6
bna01212 Fatty acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi01200 Carbon metabolism 5
sbi00710 Carbon fixation by Calvin cycle 4
sbi01230 Biosynthesis of amino acids 4
sbi00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 10
sot04075 Plant hormone signal transduction 8
sot00270 Cysteine and methionine metabolism 2
sot00460 Cyanoamino acid metabolism 2
sot00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 6
cit04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 11
nta04075 Plant hormone signal transduction 9
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 11
nta04075 Plant hormone signal transduction 9
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824268 817148 100786957 100527909 778262 778264 4339461 4325934 100278855 100193900 103842162 103872640 100259075 100250722 7480152 7470704 11418141 11412169 123113736 123123248 123444254 123452768 107897613 107914285 106391068 106368544 5719493 8059174 8081240 102577924 102598150 102629175 102624932 100846409 107831598 142172988
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