Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8055952   protein ROOT PRIMORDIUM DEFECTIVE 1 
 zma-u.5   100383051   Ubiquitin carboxyl-terminal hydrolase family protein 
 osa-u.5   4336567   protein WHAT'S THIS FACTOR 9, mitochondrial 
 tae-r.2   123046213   protein WHAT'S THIS FACTOR 9, mitochondrial 
 tae-r.2   123189976   protein WHAT'S THIS FACTOR 9, mitochondrial 
 hvu-r.1   123427413   protein WHAT'S THIS FACTOR 9, mitochondrial 
 bdi-r.1   100843536   protein WHAT'S THIS FACTOR 1 
 ath-u.5   AT3G58520   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100808403   protein WHAT'S THIS FACTOR 9, mitochondrial 
 gma-u.5   100801315   protein WHAT'S THIS FACTOR 9, mitochondrial 
 sly-u.5   101251628   protein WHAT'S THIS FACTOR 9, mitochondrial 
 bra-r.6   103841730   protein WHAT'S THIS FACTOR 9, mitochondrial 
 vvi-u.5   100255516   protein WHAT'S THIS FACTOR 9, mitochondrial 
 ppo-u.5   7455626   protein WHAT'S THIS FACTOR 9, mitochondrial 
 mtr-u.5   25499557   protein WHAT'S THIS FACTOR 9, mitochondrial 
 ghi-r.1   107957556   protein WHAT'S THIS FACTOR 9, mitochondrial 
 ghi-r.1   107904936   protein WHAT'S THIS FACTOR 9, mitochondrial 
 bna-r.1   106368147   protein WHAT'S THIS FACTOR 9, mitochondrial-like 
 bna-r.1   106403215   protein WHAT'S THIS FACTOR 9, mitochondrial-like 
 sot-r.1   102586506   protein ROOT PRIMORDIUM DEFECTIVE 1 
 cit-r.1   102613721   protein WHAT'S THIS FACTOR 9, mitochondrial 
 nta-r.1   107796026   protein WHAT'S THIS FACTOR 9, mitochondrial 
 nta-r.1   107794593   protein WHAT'S THIS FACTOR 9, mitochondrial 

close


Top 50 coexpressed genes to 8055952 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8055952 (sbi-r.1 coexpression data)

CoexMap"8055952"


sbiLOC8055952 | Entrez gene ID : 8055952      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 2 1 1 1 2 1 1 1 1 1 2 2 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002446880.1 [sequence] [blastp]
XP_021319137.1 [sequence] [blastp]
XP_021319138.1 [sequence] [blastp]
XP_021319139.1 [sequence] [blastp]
XP_021319140.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_002446880.1)
chlo 4,  cyto 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319137.1)
chlo 4,  cyto 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319138.1)
chlo 4,  cyto 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319139.1)
chlo 4,  cyto 4,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319140.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_002446880.1)
mito 6  (predict for XP_021319137.1)
mito 6  (predict for XP_021319138.1)
mito 6  (predict for XP_021319139.1)
mito 6  (predict for XP_021319140.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8055952
zma-u.5
for
100383051
osa-u.5
for
4336567
tae-r.2
for
123046213
tae-r.2
for
123189976
hvu-r.1
for
123427413
bdi-r.1
for
100843536
ath-u.5
for
AT3G58520
gma-u.5
for
100808403
gma-u.5
for
100801315
sly-u.5
for
101251628
bra-r.6
for
103841730
vvi-u.5
for
100255516
ppo-u.5
for
7455626
mtr-u.5
for
25499557
ghi-r.1
for
107957556
ghi-r.1
for
107904936
bna-r.1
for
106368147
bna-r.1
for
106403215
sot-r.1
for
102586506
cit-r.1
for
102613721
nta-r.1
for
107796026
nta-r.1
for
107794593


Ortholog ID: 10830
Species sbi zma osa tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC8055952 LOC100383051 LOC4336567 LOC123046213 LOC123189976 LOC123427413 LOC100843536 AT3G58520 LOC100808403 LOC100801315 LOC101251628 LOC103841730 LOC100255516 LOC7455626 LOC25499557 LOC107957556 LOC107904936 LOC106368147 LOC106403215 LOC102586506 LOC102613721 LOC107796026 LOC107794593
Function* protein ROOT PRIMORDIUM DEFECTIVE 1 Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 1 Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial-like protein WHAT'S THIS FACTOR 9, mitochondrial-like protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial protein WHAT'S THIS FACTOR 9, mitochondrial
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta00730 Thiamine metabolism 2
nta00900 Terpenoid backbone biosynthesis 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8055952 100383051 4336567 123046213 123189976 123427413 100843536 825021 100808403 100801315 101251628 103841730 100255516 7455626 25499557 107957556 107904936 106368147 106403215 102586506 102613721 107796026 107794593
The preparation time of this page was 0.1 [sec].