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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8062110   probable E3 ubiquitin-protein ligase RNF144A-B 
 sbi-r.1   8062109   uncharacterized LOC8062109 
 zma-u.5   100194163   putative RING zinc finger domain superfamily protein 
 zma-u.5   100381983   putative RING zinc finger domain superfamily protein 
 zma-u.5   100280727   ubiquitin-protein ligase/ zinc ion binding protein 
 osa-u.5   4346618   E3 ubiquitin-protein ligase RSL1 
 hvu-r.1   123398108   E3 ubiquitin-protein ligase RNF144A-like 
 bdi-r.1   100841173   E3 ubiquitin-protein ligase RNF144A 
 bdi-r.1   100827708   uncharacterized protein DDB_G0292642 
 sly-u.5   101243987   E3 ubiquitin-protein ligase RSL1-like 
 sly-u.5   101267277   E3 ubiquitin-protein ligase RSL1-like 
 vvi-u.5   100256964   E3 ubiquitin-protein ligase RSL1 
 vvi-u.5   100252570   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18100148   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18094363   E3 ubiquitin-protein ligase RSL1 
 ghi-r.1   107906023   probable E3 ubiquitin-protein ligase RNF144A-B 
 ghi-r.1   107906024   probable E3 ubiquitin-protein ligase RNF217 
 bna-r.1   111200378   E3 ubiquitin-protein ligase RSL1-like 
 bna-r.1   106412171   E3 ubiquitin-protein ligase RSL1 
 sot-r.1   107057658   probable E3 ubiquitin-protein ligase RNF217 
 sot-r.1   102596349   probable E3 ubiquitin-protein ligase RNF217 
 nta-r.1   107771754   E3 ubiquitin-protein ligase RSL1 
 cre-r.1   CHLRE_03g150850v5   uncharacterized protein 
 cre-r.1   CHLRE_01g060712v5   uncharacterized protein 
 cre-r.1   CHLRE_05g238374v5   uncharacterized protein 

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Top 50 coexpressed genes to 8062110 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8062110 (sbi-r.1 coexpression data)

CoexMap"8062110"


sbiLOC8062110 | Entrez gene ID : 8062110      
Species sbi zma osa hvu bdi sly vvi ppo ghi bna sot nta cre tae mtr ath gma bra cit
Paralog 2 3 1 1 2 2 2 2 2 2 2 1 3 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (28 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (65 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (251 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (143 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (30 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
Protein XP_002460222.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_002460222.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002460222.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8062110
sbi-r.1
for
8062109
zma-u.5
for
100194163
zma-u.5
for
100381983
zma-u.5
for
100280727
osa-u.5
for
4346618
hvu-r.1
for
123398108
bdi-r.1
for
100841173
bdi-r.1
for
100827708
sly-u.5
for
101243987
sly-u.5
for
101267277
vvi-u.5
for
100256964
vvi-u.5
for
100252570
ppo-u.5
for
18100148
ppo-u.5
for
18094363
ghi-r.1
for
107906023
ghi-r.1
for
107906024
bna-r.1
for
111200378
bna-r.1
for
106412171
sot-r.1
for
107057658
sot-r.1
for
102596349
nta-r.1
for
107771754
cre-r.1
for
CHLRE_03g150850v5
cre-r.1
for
CHLRE_01g060712v5
cre-r.1
for
CHLRE_05g238374v5


Ortholog ID: 369
Species sbi sbi zma zma zma hvu bdi sly sly vvi vvi ppo ppo mtr ghi ghi ghi sot cit cit nta cre cre cre
Symbol LOC8062110 LOC8062109 LOC100194163 LOC100381983 LOC100280727 LOC123431232 LOC100827708 LOC101247495 LOC101249062 LOC100256964 LOC100252570 LOC18094363 LOC7467917 LOC25486596 LOC107907073 LOC107958333 LOC107958821 LOC102585890 LOC102612755 LOC102618889 LOC107792398 CHLRE_03g150850v5 CHLRE_01g060712v5 CHLRE_05g238374v5
Function* probable E3 ubiquitin-protein ligase RNF144A-B uncharacterized LOC8062109 putative RING zinc finger domain superfamily protein putative RING zinc finger domain superfamily protein ubiquitin-protein ligase/ zinc ion binding protein uncharacterized LOC123431232 uncharacterized protein DDB_G0292642 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1-like E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 uncharacterized LOC7467917 probable E3 ubiquitin-protein ligase RNF217 ranBP-type and C3HC4-type zinc finger-containing protein 1 probable E3 ubiquitin-protein ligase RNF144A-B probable E3 ubiquitin-protein ligase RNF217 probable E3 ubiquitin-protein ligase RNF217 E3 ubiquitin-protein ligase RSL1-like E3 ubiquitin-protein ligase RSL1-like E3 ubiquitin-protein ligase RSL1 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8062110 8062109 100194163 100381983 100280727 123431232 100827708 101247495 101249062 100256964 100252570 18094363 7467917 25486596 107907073 107958333 107958821 102585890 102612755 102618889 107792398 5721143 5725742 5723282
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