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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_05g238374v5   uncharacterized protein 
 cre-r.1   CHLRE_03g150850v5   uncharacterized protein 
 cre-r.1   CHLRE_01g060712v5   uncharacterized protein 
 gma-u.5   100803898   probable E3 ubiquitin-protein ligase rbrA 
 sly-u.5   101250202   E3 ubiquitin-protein ligase RSL1 
 sly-u.5   101243987   E3 ubiquitin-protein ligase RSL1-like 
 sly-u.5   101247495   E3 ubiquitin-protein ligase RSL1 
 osa-u.5   4346618   E3 ubiquitin-protein ligase RSL1 
 zma-u.5   100280727   ubiquitin-protein ligase/ zinc ion binding protein 
 zma-u.5   100381983   putative RING zinc finger domain superfamily protein 
 zma-u.5   100194163   putative RING zinc finger domain superfamily protein 
 vvi-u.5   100256964   E3 ubiquitin-protein ligase RSL1 
 vvi-u.5   100252570   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   18100148   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7467917   uncharacterized LOC7467917 
 ghi-r.1   107906024   probable E3 ubiquitin-protein ligase RNF217 
 ghi-r.1   107906023   probable E3 ubiquitin-protein ligase RNF144A-B 
 ghi-r.1   107919472   probable E3 ubiquitin-protein ligase RNF217 
 bna-r.1   111200378   E3 ubiquitin-protein ligase RSL1-like 
 bna-r.1   106412171   E3 ubiquitin-protein ligase RSL1 
 sbi-r.1   8062109   uncharacterized LOC8062109 
 sbi-r.1   8062110   probable E3 ubiquitin-protein ligase RNF144A-B 
 sot-r.1   102596349   probable E3 ubiquitin-protein ligase RNF217 
 sot-r.1   102595716   probable E3 ubiquitin-protein ligase RNF217 
 sot-r.1   102597290   probable E3 ubiquitin-protein ligase RNF217 
 cit-r.1   102618889   E3 ubiquitin-protein ligase RSL1-like 
 cit-r.1   102612454   E3 ubiquitin-protein ligase RSL1-like 
 cit-r.1   102612755   E3 ubiquitin-protein ligase RSL1-like 
 bdi-r.1   100827708   uncharacterized protein DDB_G0292642 
 nta-r.1   107782090   E3 ubiquitin-protein ligase RSL1 

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Top 50 coexpressed genes to CHLRE_05g238374v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_05g238374v5 (cre-r.1 coexpression data)

CoexMap"5723282"


creCHLRE_05g238374v5 | Entrez gene ID : 5723282    
Species cre gma sly osa zma vvi ppo ghi bna sbi sot cit bdi nta bra ath hvu mtr tae
Paralog 3 1 3 1 3 2 2 3 2 2 3 3 1 1 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (14 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (40 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (159 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (145 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (9 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (65 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
Protein XP_042924881.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_042924881.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_042924881.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_05g238374v5
cre-r.1
for
CHLRE_03g150850v5
cre-r.1
for
CHLRE_01g060712v5
gma-u.5
for
100803898
sly-u.5
for
101250202
sly-u.5
for
101243987
sly-u.5
for
101247495
osa-u.5
for
4346618
zma-u.5
for
100280727
zma-u.5
for
100381983
zma-u.5
for
100194163
vvi-u.5
for
100256964
vvi-u.5
for
100252570
ppo-u.5
for
18100148
ppo-u.5
for
7467917
ghi-r.1
for
107906024
ghi-r.1
for
107906023
ghi-r.1
for
107919472
bna-r.1
for
111200378
bna-r.1
for
106412171
sbi-r.1
for
8062109
sbi-r.1
for
8062110
sot-r.1
for
102596349
sot-r.1
for
102595716
sot-r.1
for
102597290
cit-r.1
for
102618889
cit-r.1
for
102612454
cit-r.1
for
102612755
bdi-r.1
for
100827708
nta-r.1
for
107782090


Ortholog ID: 369
Species cre cre cre sly sly zma zma zma vvi vvi ppo ppo mtr hvu ghi ghi ghi sbi sbi sot cit cit bdi nta
Symbol CHLRE_05g238374v5 CHLRE_03g150850v5 CHLRE_01g060712v5 LOC101247495 LOC101249062 LOC100280727 LOC100381983 LOC100194163 LOC100256964 LOC100252570 LOC7467917 LOC18094363 LOC25486596 LOC123431232 LOC107958333 LOC107958821 LOC107907073 LOC8062109 LOC8062110 LOC102585890 LOC102618889 LOC102612755 LOC100827708 LOC107792398
Function* uncharacterized protein uncharacterized protein uncharacterized protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1-like ubiquitin-protein ligase/ zinc ion binding protein putative RING zinc finger domain superfamily protein putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 uncharacterized LOC7467917 E3 ubiquitin-protein ligase RSL1 probable E3 ubiquitin-protein ligase RNF217 uncharacterized LOC123431232 probable E3 ubiquitin-protein ligase RNF144A-B probable E3 ubiquitin-protein ligase RNF217 ranBP-type and C3HC4-type zinc finger-containing protein 1 uncharacterized LOC8062109 probable E3 ubiquitin-protein ligase RNF144A-B probable E3 ubiquitin-protein ligase RNF217 E3 ubiquitin-protein ligase RSL1-like E3 ubiquitin-protein ligase RSL1-like uncharacterized protein DDB_G0292642 E3 ubiquitin-protein ligase RSL1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
cre03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 4
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723282 5721143 5725742 101247495 101249062 100280727 100381983 100194163 100256964 100252570 7467917 18094363 25486596 123431232 107958333 107958821 107907073 8062109 8062110 102585890 102618889 102612755 100827708 107792398
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