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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8062467   phenylalanine ammonia-lyase 
 zma-u.5   100281042   phenylalanine ammonia-lyase 
 zma-u.5   100281532   phenylalanine ammonia-lyase 
 zma-u.5   100285115   phenylalanine ammonia-lyase 
 osa-u.5   4330040   phenylalanine ammonia-lyase-like 
 osa-u.5   4330034   phenylalanine ammonia-lyase-like 
 ath-u.5   PAL1   PHE ammonia lyase 1 
 ath-u.5   PAL4   phenylalanine ammonia-lyase 4 
 ath-u.5   PAL2   phenylalanine ammonia-lyase 2 
 gma-u.5   PAL2.1   phenylalanine ammonia-lyase 2.1 
 gma-u.5   PAL2.2   phenylalanine ammonia-lyase 2.2 
 gma-u.5   PAL1.1   phenylalanine ammonia-lyase 1.1 
 sly-u.5   101243631   phenylalanine ammonia-lyase-like 
 sly-u.5   101243656   phenylalanine ammonia-lyase 6 
 sly-u.5   PAL3   phenylalanine ammonia-lyase 3 
 vvi-u.5   100855356   phenylalanine ammonia-lyase 
 vvi-u.5   100853659   phenylalanine ammonia-lyase-like 
 vvi-u.5   100241575   phenylalanine ammonia-lyase-like 
 ppo-u.5   7479878   phenylalanine ammonia-lyase G4 
 ppo-u.5   7486485   phenylalanine ammonia-lyase-like 
 ppo-u.5   18100180   phenylalanine ammonia-lyase-like 
 mtr-u.5   25499316   phenylalanine ammonia-lyase 
 mtr-u.5   25499317   phenylalanine ammonia-lyase 
 mtr-u.5   120576914   phenylalanine ammonia-lyase 

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Top 50 coexpressed genes to 8062467 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8062467 (sbi-r.1 coexpression data)

CoexMap"8062467"


sbiLOC8062467 | Entrez gene ID : 8062467      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 3 2 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi00360 [list] [network] Phenylalanine metabolism (46 genes)
sbi00940 [list] [network] Phenylpropanoid biosynthesis (213 genes)
GO BP
GO:0006559 [list] [network] L-phenylalanine catabolic process  (14 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0016841 [list] [network] ammonia-lyase activity  (10 genes)  IEA  
Protein XP_002466775.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 3,  E.R. 2,  golg_plas 2,  vacu 1,  golg 1,  nucl_plas 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_002466775.2)
Subcellular
localization
TargetP
other 6  (predict for XP_002466775.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8062467

.
zma-u.5
for
100281042

.
zma-u.5
for
100281532

.
zma-u.5
for
100285115

.
osa-u.5
for
4330040

.
osa-u.5
for
4330034

.
ath-u.5
for
PAL1

.
ath-u.5
for
PAL4

.
ath-u.5
for
PAL2

.
gma-u.5
for
PAL2.1

.
gma-u.5
for
PAL2.2

.
gma-u.5
for
PAL1.1

.
sly-u.5
for
101243631

.
sly-u.5
for
101243656

.
sly-u.5
for
PAL3

.
vvi-u.5
for
100855356

.
vvi-u.5
for
100853659

.
vvi-u.5
for
100241575

.
ppo-u.5
for
7479878

.
ppo-u.5
for
7486485

.
ppo-u.5
for
18100180

.
mtr-u.5
for
25499316

.
mtr-u.5
for
25499317

.
mtr-u.5
for
120576914

.


Ortholog ID: 234
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PAL3 PAL1 PAL2.3 PAL2.2 LOC101243656 PAL3 LOC4351235 LOC4336415 LOC542258 LOC100381820 LOC103870475 LOC103867229 LOC100251137 LOC100240904 LOC7463441 LOC7486485 LOC120576914 LOC11414166 LOC123137536 LOC123180545 LOC123401735 LOC123401027 LOC107905303 LOC107948312 LOC111197696 LOC106388514 LOC8062467 LOC8054282 LOC102585357 LOC102596891 LOC102620173 LOC102620464 LOC100843583 LOC100839236 LOC107786762 LOC107792668
Function* phenyl alanine ammonia-lyase 3 PHE ammonia lyase 1 phenylalanine ammonia-lyase 2.3 phenylalanine ammonia-lyase 2.2 phenylalanine ammonia-lyase 6 phenylalanine ammonia-lyase 3 phenylalanine ammonia-lyase phenylalanine ammonia-lyase phenylalanine ammonia lyase 3 phenylalanine ammonia-lyase phenylalanine ammonia-lyase 4 phenylalanine ammonia-lyase 1 phenylalanine ammonia-lyase phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase G2B phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase phenylalanine ammonia-lyase 2 phenylalanine ammonia-lyase phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase phenylalanine ammonia-lyase 2 phenylalanine ammonia-lyase 1-like phenylalanine ammonia-lyase phenylalanine ammonia-lyase phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase 1 phenylalanine ammonia-lyase phenylalanine ammonia-lyase-like phenylalanine ammonia-lyase phenylalanine ammonia-lyase phenylalanine ammonia-lyase phenylalanine ammonia-lyase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 10
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ath00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 13
gma00360 Phenylalanine metabolism 7
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 5
gma00941 Flavonoid biosynthesis 4
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 17
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 6
gma00941 Flavonoid biosynthesis 5
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
gma00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 9
sly00941 Flavonoid biosynthesis 5
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00360 Phenylalanine metabolism 7
sly00940 Phenylpropanoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00360 Phenylalanine metabolism 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 5
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
osa01230 Biosynthesis of amino acids 3
osa00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 6
zma01230 Biosynthesis of amino acids 5
zma00270 Cysteine and methionine metabolism 3
zma00670 One carbon pool by folate 3
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 10
zma00360 Phenylalanine metabolism 7
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma00941 Flavonoid biosynthesis 2
zma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 13
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00360 Phenylalanine metabolism 4
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 16
bra00941 Flavonoid biosynthesis 6
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
bra00360 Phenylalanine metabolism 5
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00360 Phenylalanine metabolism 10
vvi00940 Phenylpropanoid biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 15
vvi00360 Phenylalanine metabolism 10
vvi00941 Flavonoid biosynthesis 3
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 9
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00940 Phenylpropanoid biosynthesis 3
ppo00360 Phenylalanine metabolism 3
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 10
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00940 Phenylpropanoid biosynthesis 3
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 10
mtr00360 Phenylalanine metabolism 5
mtr00941 Flavonoid biosynthesis 5
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 9
mtr00360 Phenylalanine metabolism 5
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00360 Phenylalanine metabolism 18
tae00940 Phenylpropanoid biosynthesis 18
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 13
tae00360 Phenylalanine metabolism 10
tae01230 Biosynthesis of amino acids 4
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 4
hvu00941 Flavonoid biosynthesis 4
hvu00270 Cysteine and methionine metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 10
hvu00360 Phenylalanine metabolism 7
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu01230 Biosynthesis of amino acids 4
hvu00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 10
ghi00940 Phenylpropanoid biosynthesis 4
ghi04712 Circadian rhythm - plant 2
ghi00944 Flavone and flavonol biosynthesis 2
ghi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 11
ghi00360 Phenylalanine metabolism 9
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00360 Phenylalanine metabolism 7
bna00940 Phenylpropanoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 5
bna00360 Phenylalanine metabolism 4
bna00270 Cysteine and methionine metabolism 2
bna00670 One carbon pool by folate 2
bna00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 9
sbi00360 Phenylalanine metabolism 8
sbi01230 Biosynthesis of amino acids 3
sbi01040 Biosynthesis of unsaturated fatty acids 2
sbi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 13
sbi00360 Phenylalanine metabolism 8
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sbi01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 12
sot00360 Phenylalanine metabolism 9
sot01230 Biosynthesis of amino acids 5
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 11
sot00360 Phenylalanine metabolism 9
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 5
cit00360 Phenylalanine metabolism 3
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
cit00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 5
cit00360 Phenylalanine metabolism 3
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 10
bdi00360 Phenylalanine metabolism 6
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 5
bdi00941 Flavonoid biosynthesis 4
bdi00670 One carbon pool by folate 3
bdi01230 Biosynthesis of amino acids 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00360 Phenylalanine metabolism 7
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 9
nta00360 Phenylalanine metabolism 7
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830302 818280 100803857 100818777 101243656 101243922 4351235 4336415 542258 100381820 103870475 103867229 100251137 100240904 7463441 7486485 120576914 11414166 123137536 123180545 123401735 123401027 107905303 107948312 111197696 106388514 8062467 8054282 102585357 102596891 102620173 102620464 100843583 100839236 107786762 107792668
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