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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8063999   RNA pseudouridine synthase 3, mitochondrial 
 sbi-r.1   8062586   RNA pseudouridine synthase 4, mitochondrial 
 zma-u.5   100381582   RNA pseudouridine synthase 3 mitochondrial 
 zma-u.5   100285271   RNA pseudouridine synthase 4 mitochondrial 
 osa-u.5   4346373   RNA pseudouridine synthase 4, mitochondrial-like 
 osa-u.5   4346062   RNA pseudouridine synthase 3, mitochondrial-like 
 tae-r.2   123103274   RNA pseudouridine synthase 4, mitochondrial 
 tae-r.2   123111465   RNA pseudouridine synthase 4, mitochondrial 
 tae-r.2   123120610   RNA pseudouridine synthase 4, mitochondrial 
 hvu-r.1   123411625   RNA pseudouridine synthase 3, mitochondrial 
 hvu-r.1   123399115   RNA pseudouridine synthase 4, mitochondrial 
 bdi-r.1   100846929   RNA pseudouridine synthase 3, mitochondrial 
 bdi-r.1   100821438   RNA pseudouridine synthase 4, mitochondrial 
 ath-u.5   AT3G19440   Pseudouridine synthase family protein 
 ath-u.5   AT1G78910   Pseudouridine synthase family protein 
 gma-u.5   100817786   RNA pseudouridine synthase 3, mitochondrial 
 gma-u.5   100779473   RNA pseudouridine synthase 4, mitochondrial 
 sly-u.5   101264032   RNA pseudouridine synthase 3, mitochondrial 
 sly-u.5   101250345   RNA pseudouridine synthase 4, mitochondrial 
 bra-r.6   103869454   RNA pseudouridine synthase 4, mitochondrial 
 bra-r.6   103832368   RNA pseudouridine synthase 3, mitochondrial 
 vvi-u.5   100259844   RNA pseudouridine synthase 3, mitochondrial 
 vvi-u.5   100253686   RNA pseudouridine synthase 4, mitochondrial 
 ppo-u.5   7457559   RNA pseudouridine synthase 4, mitochondrial 
 ppo-u.5   18098356   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25497848   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25494475   RNA pseudouridine synthase 4, mitochondrial 
 ghi-r.1   107958486   RNA pseudouridine synthase 3, mitochondrial 
 ghi-r.1   107928960   RNA pseudouridine synthase 4, mitochondrial 
 ghi-r.1   107906366   RNA pseudouridine synthase 3, mitochondrial 
 bna-r.1   106428326   RNA pseudouridine synthase 4, mitochondrial 
 bna-r.1   106377216   RNA pseudouridine synthase 4, mitochondrial 
 bna-r.1   125589185   RNA pseudouridine synthase 3, mitochondrial-like 
 sot-r.1   102602144   RNA pseudouridine synthase 4, mitochondrial 
 sot-r.1   102580767   RNA pseudouridine synthase 3, mitochondrial 
 cit-r.1   102631191   RNA pseudouridine synthase 4, mitochondrial 
 cit-r.1   102613704   RNA pseudouridine synthase 3, mitochondrial 
 nta-r.1   107783994   RNA pseudouridine synthase 4, mitochondrial 
 nta-r.1   107785285   RNA pseudouridine synthase 3, mitochondrial-like 
 nta-r.1   107796320   RNA pseudouridine synthase 4, mitochondrial-like 
 cre-r.1   CHLRE_10g428400v5   uncharacterized protein 

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Top 50 coexpressed genes to 8063999 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063999 (sbi-r.1 coexpression data)

CoexMap"8063999"


sbiLOC8063999 | Entrez gene ID : 8063999    
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 2 2 3 2 2 2 2 2 2 2 2 2 3 3 2 2 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (27 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_021321409.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  chlo_mito 4  (predict for XP_021321409.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_021321409.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8063999
sbi-r.1
for
8062586
zma-u.5
for
100381582
zma-u.5
for
100285271
osa-u.5
for
4346373
osa-u.5
for
4346062
tae-r.2
for
123103274
tae-r.2
for
123111465
tae-r.2
for
123120610
hvu-r.1
for
123411625
hvu-r.1
for
123399115
bdi-r.1
for
100846929
bdi-r.1
for
100821438
ath-u.5
for
AT3G19440
ath-u.5
for
AT1G78910
gma-u.5
for
100817786
gma-u.5
for
100779473
sly-u.5
for
101264032
sly-u.5
for
101250345
bra-r.6
for
103869454
bra-r.6
for
103832368
vvi-u.5
for
100259844
vvi-u.5
for
100253686
ppo-u.5
for
7457559
ppo-u.5
for
18098356
mtr-u.5
for
25497848
mtr-u.5
for
25494475
ghi-r.1
for
107958486
ghi-r.1
for
107928960
ghi-r.1
for
107906366
bna-r.1
for
106428326
bna-r.1
for
106377216
bna-r.1
for
125589185
sot-r.1
for
102602144
sot-r.1
for
102580767
cit-r.1
for
102631191
cit-r.1
for
102613704
nta-r.1
for
107783994
nta-r.1
for
107785285
nta-r.1
for
107796320
cre-r.1
for
CHLRE_10g428400v5


Ortholog ID: 3690
Species sbi sbi zma zma osa osa tae tae tae hvu hvu bdi bdi ath ath gma gma sly sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC8063999 LOC8062586 LOC100381582 LOC100285271 LOC4346373 LOC4346062 LOC123103274 LOC123111465 LOC123167500 LOC123411625 LOC123399115 LOC100846929 LOC100821438 AT3G19440 AT1G78910 LOC100817786 LOC100779473 LOC101264032 LOC101250345 LOC103869454 LOC103832368 LOC100259844 LOC100253686 LOC7457559 LOC18098356 LOC25497848 LOC25494475 LOC107928960 LOC107906366 LOC107934157 LOC106428326 LOC106377216 LOC106346640 LOC102602144 LOC102580767 LOC102631191 LOC102613704 LOC107783994 LOC107785285 LOC107796320 CHLRE_10g428400v5
Function* RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3 mitochondrial RNA pseudouridine synthase 4 mitochondrial RNA pseudouridine synthase 4, mitochondrial-like RNA pseudouridine synthase 3, mitochondrial-like RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial Pseudouridine synthase family protein Pseudouridine synthase family protein RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial-like RNA pseudouridine synthase 4, mitochondrial-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8063999 8062586 100381582 100285271 4346373 4346062 123103274 123111465 123167500 123411625 123399115 100846929 100821438 821478 844229 100817786 100779473 101264032 101250345 103869454 103832368 100259844 100253686 7457559 18098356 25497848 25494475 107928960 107906366 107934157 106428326 106377216 106346640 102602144 102580767 102631191 102613704 107783994 107785285 107796320 5728141
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